Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name MRPS17P3
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chrUn_NW_022154627v1). Each line represents a retrocopy.
Species Gorilla gorilla
Coordinates chrX:112904992-112906092  UCSC
Strand +
Parental Sequence XM_019030741.2
Parental seq. overlap 697 bp
Parental seq. overlap (%) 36.4%
Genomic Region Intergenic
Retrocopy Summary MRPS17P3, located on chrX:112904992-112906092, is a retrocopy of the parental gene MRPS17. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name MRPS17
Full Name N/A
Also known as MRPS17
Coordinate chrUn_NW_022154627v1:414587-419296
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens MRPS17P9
Chimpanzee Pan troglodytes MRPS17P3
Bonobo Pan paniscus MRPS17P3
Orangutan Pongo abelii MRPS17P3
Gibbon Nomascus leucogenys MRPS17P3
Crab-eating macaque Macaca fascicularis MRPS17P3
Rhesus Macaca mulatta MRPS17P3
Baboon Papio anubis MRPS17P3
Golden snub-nosed monkey Rhinopithecus roxellana LOC104675895P2
Marmoset Callithrix jacchus LOC100412910P3
Green monkey Chlorocebus sabaeus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>MRPS17P3
tCTGCGACCGGCACTCCACGGGTCAGATGGCTGCACAGCAGTGGCGGAGGTGACCATAGCCACATAATGTCCATAGTTCATTTATCTGTTCATGCCAAATGGATTGTGGGGAAGGTGACTGGGACAAAAATGCAAAAGACTGCTAAAGTGAGAGTGATCAGGCTTGTTCTGAATCCCCATTTATTAAAGTATTATAATAAGCGAAAAACGTACTTTGCTCACAATGCCCTTCAGCAGTGCACAATTGGGGATATCGTGCTTCTCAAAGCTTTACCTGTTCCACGAACAAAGCATGTGAAACATGAACTGGCTGAGATTGTTTTCAAAGTTGGAAAACTCGTAGATCCAGTGACAGGAAAACCTTGTGCAGGAACTACCTACCTGGAGAGTCCATTGAGTTCGGAAACCACCCAGGTAAGCAAAAATCTGGAAGAACTCAATATCTCTTCAGCACAGTGAAGGAGGAATGGAAGAAGAAGCCAAAGGGAAAGATTTACATGTTTGTTTATTTTATGGAAAAAGAAATTTTTCTAAGTTTCATCACAAACTGTGTCCAATTTCTCTTGTGGTATTTATGAAATAGCTAAAAGCAAATGAAGTAAAGGGCATATTATGGTTTTTCACAAAGGTTTATGGTCATGCTTCAAATTTTCTTTTCAGTGAACATACTTTCATGTTACACTAAGTGTGTCTAGCGGTCTGTTGCATTTTGTAAGCTCACTGTTTTAAAAGGcAGTTTTCTTTTTTTCATTCAAAAGAATCTTGAATTTACCTTAGAACCTTTATTTTGAGGGAAGAAAGCCTTT
>XM_019030741.2
ATACACGGCCTAAGAGAGGGGTAGTGTGGGACAGAGCCAATGCGTACGGCGTGACGCCATCCCGCTGCGACCGGCGCTCCCCGGGGCAGGTGGCTGCATAGTCTTGGCGGAGGTGACCAAAGCCACGTAATGTCCGTAGTTCGCTCATCTGTCCATGCCAAATGGATTGTGGGGAAGGTGATTGGGACAAAAATGCAAAAGACTGCTAAAGTGAGAGTGACCAGGCTTGTTCTGGATCCCTATTTATTAAAGTATTTTAATAAGCGGAAAACCTACTTTGCTCACGATGCCCTTCAGCAGTGCACAGTTGGGGATATTGTGCTTCTCAGAGCTTTACCTGTTCCACGAGCAAAGCATGTGAAACATGAACTGGCTGAGATCGTTTTCAAAGTTGGAAAAGTCATAGATCCAGTGACAGGAAAGCCCTGTGCCGGAACTACCTACCTGGAGAGTCCGTTGAGTTCGGAAACCACCCAGCTAAGCAAAAATCTGGAAGAACTCAATATCTCTTCAGCACAGTGAAGCGGGAGTGGAAGAAGGATCTAAAGGGAAAAACTGACATGTTTATGTTATGGAAAAAGAAATTTTTCTAAGTTTCATCACAAACTGTGTCCAGTTTCTCTGTGGTGTTTATGAAATAGCTAAAAGCAAATGAAGTAAAGGGCATACTATGGTTTTTCACAAACGTTTATGGTCGTGTTTCAAATTTTCATCATTTCATTGAACATACTTCCACGTTACACTAAGTGTGCCTAGCAGTCTGTTGCATTTTGTAAGCTCACTGTTTtttgttttgttttgttttgttttttgttttgagatggaatctcactctgtcacccaggctggagtgcagtggtgcaatcttggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcctgccaccatgcccagctaatttttttttttttttttttttttggtatttttagtagagacggggtttcaccgtgttggccaggatggtcttgatctcctgacctcgtgatctgcctgccttggcctctcagagtgctgggattacaggcgtgagccactgtgcTTAGCAAGCTCACTGTTATAGAAGGttttatgtttgtcttttgagacagggtcttgctttgttgccggggctggagtgcagtggtatgatcttggctcactgcagccttgacctccctggctccagcatctttccaccccagccttctgagtagctgggaacacaggagcataccactacacttggctgattttttgtaaattttgtagagacagggtctccctgtgttgcccaggttggtctcggactcctgggagccatctgcccatcttggcctaacaaagtgctgggattacaggcctgagccactgtgcccagccGGTTTCCTTTTTTTCATTCAAAGGAATTTTGAATTTATCTTAGAACCTTTATTTTGAAGGAAGAAAGTCtttttttttctgagctggagtttcactcttgttgcccaggctggagtgcaatggcatgatctcagcccaccacaacctccgcctcccaggttcaagtgattctgctcagcctcctgagtagctaggattgcaggcatgtgccaccacgcccagctaattttgtatttttagtagggatggggtttctccatgtttgtcaggctagtcttgaactccggacctcaggtgatccgcccgcctgggcctctcaaagtgcttggattacaggcatgagccactgcATGTAATGACCAGCCACTGGTCAGAATTCTTTCAATCAAGCTGTGTTAATAAGAATATTGATGTGTGGAAAATAAAATTTTACAATTCTG

Publications

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