Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name MRPS18CP3
Plot displaying the genomic locations of a retrocopy (in chr15) and its respective parental gene (in chr4). Each line represents a retrocopy.
Species Gorilla gorilla
Coordinates chr15:2430398-2430873  UCSC
Strand -
Parental Sequence XM_031010252.1
Parental seq. overlap 428 bp
Parental seq. overlap (%) 26.1%
Genomic Region Intergenic
Retrocopy Summary MRPS18CP3, located on chr15:2430398-2430873, is a retrocopy of the parental gene MRPS18C. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name MRPS18C
Full Name N/A
Also known as MRPS18C
Coordinate chr4:80929982-80936326
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens MRPS18CP9
Chimpanzee Pan troglodytes MRPS18CP3
Bonobo Pan paniscus MRPS18CP3
Orangutan Pongo abelii MRPS18CP2
Gibbon Nomascus leucogenys MRPS18CP1
Green monkey Chlorocebus sabaeus MRPS18CP3
Crab-eating macaque Macaca fascicularis MRPS18CP1
Rhesus Macaca mulatta MRPS18CP1
Baboon Papio anubis MRPS18CP2
Golden snub-nosed monkey Rhinopithecus roxellana MRPS18CP1
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>MRPS18CP3
GGAACCATGGCCACTATAGTTGCTCTTTGCAGAGGTCTGGGGAGGAAGAAGTTGACACACCTTGTAATGGCTGCTGTTAGCCTTACACATCCCAGGACTCATATGGTGCTATGGAGAAGAGGTTGTTCACAATATAAACAGATATCCAGCAATGAGGACCTGCCCATTCCAATGGAAAATTCTTATAAAGAAGCCCTTAAGAAATGTATCTTGTGTGGAAAGCAGGTAGATTTTAAGAATGTACAGCATCCCAGTTTATTTCTCCATTTGTTGGATGCATTTGTGGAAGGCACAAAACAGGTCTTTGTGGGAAGAAACAGAAAGAAATCACAAAAGCAATTAAGAGAGCTCAAATAATGGGGTTTCTGCCAGTTACATCCAAGGGTGCTGCATATCTCAAGGACCCTAAAGTTTGTAACATCAGATATCAGGAGTAAATTATATCATGTTACCACCGATAAACTTATTTTACAGTT
>XM_031010252.1
AGCGTTCTCCTGCGGAACCTTTGAACCGGGGTACTCGAGCCCACAGGGGAAGAGCAGCGGAAGGGGCCTTCCCGAATGATTTGGAATGAAAGGAAGTGGAAGAAACGCGGAACCATGGCCGCTATGGTTGCTGTTTGCGGTGGTCTAAGGAGGAAGAAGTTAACACACTTGGTAACGGCTGCTGTCAGCCTTACACATCCCGGAACTCAGACGGTGCTTTGGAGAAGAGGTTGTTCACAACAGGTATCCAGCAACGAGGACCTGCCCATTTCAATGGAAAATCCTTATAAAGAACCTCTTAAGAAATGTATCTTGTGTGGAAAGCATGTAGATTATAAGAATGTACAGCTTTTGTCCCAGTTTGTTTCTCCATTTACTGGATGCATTTATGGAAGGCACATTACAGGTCTTTGTGGGAAGAAACAGAAAGAAATCACAAAAGCAATTAAGAGAGCTCAAATAATGGGGTTTATGCCAGTTACATACAAGGATCCTGCATATCTCAAGGACCCTAAAGTTTGTAACATCAGATATCGGGAATAAATTATATCACGTTACCACTAATAAACTTATTTTACAGTAAGTGGTTGTATGATGCCAATACTGACTCAAACCAACCTTTGGATAGAAAAGTGTTTCAGGAGTGAGGTAAAGAATGACATTTCCCCTTCATACCAATGTCCATTAAGCAGATTGCTTATTTAAAATGTTAACACTCATCGCATTTTATCTATGTTGAATAAAAGTGGTTCTGTGTGATTGTCATTTATATCTGATCCCCAAATAGCTCATACAATAATCCATTCAATAGAATGGAATTAAAACTGTTCAGAATGATTTTCCAACTAGCAAATATAAGTATGCCTGGTTAAGATATCTTCCCTTTGTAGAAATGTTACATTGGGATGGATAGTGGTGCTGTCACAGAAGGACAAAATATTCCTAGACGAGTCTATCCTCAAACCAGTAGTGTCTTTTACATAAAGAGATGATTTACACCTAATAGACATTGAATATGATAGACATACATGTATATATGTATCAGTTCTGAGTTCCACTGGCCTATCCCAAATACACTGGATTACCAGGCTTGTACTGTATTCAAAATGATAGATTTGCTAAATTTGGACTCTAAACTAGGGGAGAGATTACTGTTTGTGTTGTGTTATAGTTGTGTAATAACtaaggctgccagatttagcaagcacaaatgtaggacaaatttaaattttagatGATGTTTTGCAAATTTATTGCATGGTATGCAGCATTTTATCTGGCAACTCTAGCCATAACGTACTTCTAAAAAAGTATCACTTAAGGAGAATTTTAATGACTCAGATAAATTTTCATATAAATTTCTTTCCATATTTTGAAAATAAGGCTATTCTTGCTTTTCCATTTtattttttaatagacatggtctaaatacgttgcccaggctggtctctaactcctggcttcaatcaatcctcctgacttgtcttccctaagtgctgggattacaggtgtgagccactgtgcctggtcTCACTTTTCCAATTCTATAGAATGTGTCTGTAAGCCTTCCCCTCAACAACTTAGTGAAAGGTGAAAAAAAGGTTTGGAAATAAAAGCATCTGATGTTTGAAAAA

Publications

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