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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name NDUFA5P8
Plot displaying the genomic locations of a retrocopy (in chr9) and its respective parental gene (in chr7). Each line represents a retrocopy.
Species Gorilla gorilla
Coordinates chr9:3319008-3319227  UCSC
Strand +
Parental Sequence NM_001279755.1
Parental seq. overlap 203 bp
Parental seq. overlap (%) 57.8%
Genomic Region Intergenic
Retrocopy Summary NDUFA5P8, located on chr9:3319008-3319227, is a retrocopy of the parental gene NDUFA5. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name NDUFA5
Full Name N/A
Also known as NDUFA5
Coordinate chr7:115731923-115789751
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens NDUFA5P4
Chimpanzee Pan troglodytes NDUFA5P8
Bonobo Pan paniscus NDUFA5P8
Orangutan Pongo abelii NDUFA5P9
Gibbon Nomascus leucogenys NDUFA5P6
Green monkey Chlorocebus sabaeus NDUFA5P4
Crab-eating macaque Macaca fascicularis NDUFA5P6
Rhesus Macaca mulatta NDUFA5P6
Baboon Papio anubis NDUFA5P7
Golden snub-nosed monkey Rhinopithecus roxellana NDUFA5P8
Marmoset Callithrix jacchus NDUFA5P2
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>NDUFA5P8
AAGAGGCTAAGAATATTGTACACAAAGATCTTTGATGTTCTTAAGCAAACCCCTTAAAAAGCAGCATATAGAAAGTATACAGAACAGATTGCAGATGAGAAGCTGGCTATGGTTAAAGCAGAACCAGATGTTAAAAAATTAGAAGACCAACTTCAAGGTGTTCAAATAAAAGAGGTGATTCTTCAGGCTGAAAATGAACTAAGTCTGGCAAGAAAAATGA
>NM_001279755.1
ATGGCGGGTGTGCTGAAGAAGACCACTGGCCTTGTGGGATTGGCTGTGTGCAATACTCCTCACGAGAGGCTAAGAATATTGTACACAAAGATTCTTGATGTTCTTGAGGAAATCCCTAAAAATGCAGCATATAGAAAGTATACAGAACAGATTACAAATGAGAAGCTGGCTATGGTTAAAGCGGAACCAGATGTTAAAAAATTAGAAGACCAACTTCAAGGCGGTCAATTAGAAGAGGTGATTCTTCAGGCTGAACATGAACTAAATCTGGCAAGAAAAATGAGGGAATGGAAACTATGGGAGCCATTAGTGGAAGAGCCTCCTGCCGATCAGTGGAAATGGCCAATATAA

Publications

PMID - Link Title