Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL10AP6
Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chr6). Each line represents a retrocopy.
Species Gorilla gorilla
Coordinates chr5:118177660-118178291  UCSC
Strand +
Parental Sequence XM_019029096.1
Parental seq. overlap 528 bp
Parental seq. overlap (%) 69%
Genomic Region Intergenic
Retrocopy Summary RPL10AP6, located on chr5:118177660-118178291, is a retrocopy of the parental gene RPL10A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL10A
Full Name N/A
Also known as RPL10A
Coordinate chr6:35577958-35580381
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL10AP11
Chimpanzee Pan troglodytes RPL10AP6
Bonobo Pan paniscus RPL10AP6
Orangutan Pongo abelii RPL10AP5
Gibbon Nomascus leucogenys RPL10AP2
Green monkey Chlorocebus sabaeus RPL10AP7
Crab-eating macaque Macaca fascicularis RPL10AP5
Rhesus Macaca mulatta RPL10AP5
Baboon Papio anubis RPL10AP5
Golden snub-nosed monkey Rhinopithecus roxellana RPL10AP2
Marmoset Callithrix jacchus RPL10AP1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL10AP6
GCCTGTAGGAGGCAGTGCGGGAAGTCCTGGACAGGAACCAGAGCAAGTGCCAGAAACTTTTGGGAACAGTGGAGCTACAGATCAGCTTGAAGAACTCTGACCCTCAGAAGGATGAACGCTTCTTGGGCACTGTCATCTGAAGTCCACTCGCCGCCCCAGGTTCTCCACATGTGTCCTGGGGGACCAGCAGCACTGGGTTGAGGCCAAGCCTGTGGGTATCTCCTACGTGGACATCGAGGTGCTGAAGAAACTCGACAGGAACACGAAGCTGCTCAACAAGTATGATGCCTTTTTGGCCTCAGGGTCTCTGATCAAGCAGATCCCACAAATCCTGGGCCCAGGCCTAAACAAGGAAGGCAGGTTCCCTTCCCTGCTGATGTACAGTGAAGACATGGTGGCCAAAGTTGATGAGGGGAAGTCCACAATCAAGTTCCAGGTGAAGAAGGGGCTCTGTCTGGCATGGCTCTTGGCCGTGTCAAGATGACAGACGATGAGCTTGTGTACAACGTCCATCTGGCTGTCAACTTCCTGGTATCATTGCTCAGGAAGAACTGGCAGAACATCTGGGCTTTACACATCAAGAACACCATAGGCAAGCCCCAGTGCCTGTATTAAGGCACATTCTAATAAAT
>XM_019029096.1
CGCGAGATCAGGGCCACTATTTGAGCGCATGCGCAAGGCAGGCTAGTCTCTTTTCCGGTTAGCGCGGCGTGAGAAGCCATGAGCAGCAAAGTCTCTCGCGACACCCTGTACGAGGCGGTGCGGGAAGTCCTGCACGGGAACCAGCGCAAGCGCCGCAAGTTCCTGGAGACGGTGGAGTTGCAGATCAGCTTGAAGAACTATGACCCCCAGAAGGACAAGCGCTTCTCGGGCACCGTCAGGCTTAAGTCCACCCCCCGCCCTAAGTTCTCTGTGTGTGTCCTGGGGGACCAGCAGCACTGTGACGAGGCTAAGGCCGTGGATATCCCCCACATGGACATCGAGGCGCTGAAAAAACTCAACAAGAATAAAAAACTGGTCAAGAAGCTGGCGAAGAAGTATGATGCGTTTTTGGCCTCAGAGTCTCTGATCAAGCAGATTCCACGAATCCTCGGCCCAGGTTTAAATAAGGCAGGAAAGTTCCCTTCCCTGCTCACACACAACGAAAACATGGTGGCCAAAGTGGATGAGGTGAAGTCCACAATCAAGTTCCAAATGAAGAAGGTGTTATGTCTGGCTGTAGCTGTTGGTCACGTGAAGATGACAGACGATGAGCTTGTGTATAACATTCACCTGGCTGTTAACTTCTTGGTGTCATTGCTCAAGAAAAACTGGCAGAATGTCCGGGCCTTATATATCAAGAGCACCATGGGCAAGCCCCAGCGCCTCTATTAAGGCACATTTGAATAAATTCTATTACCAGTTC

Publications

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