Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL18AP1
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr19). Each line represents a retrocopy.
Species Gorilla gorilla
Coordinates chr1:28800285-28800904  UCSC
Strand +
Parental Sequence XM_004060282.2
Parental seq. overlap 544 bp
Parental seq. overlap (%) 81%
Genomic Region Intergenic
Retrocopy Summary RPL18AP1, located on chr1:28800285-28800904, is a retrocopy of the parental gene RPL18A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL18A
Full Name N/A
Also known as RPL18A
Coordinate chr19:13205467-13208910
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL18AP19
Chimpanzee Pan troglodytes RPL18AP2
Bonobo Pan paniscus RPL18AP2
Orangutan Pongo abelii RPL18AP1
Gibbon Nomascus leucogenys RPL18AP6
Green monkey Chlorocebus sabaeus RPL18AP6
Crab-eating macaque Macaca fascicularis LOC102135222P1
Rhesus Macaca mulatta LOC717246P1
Baboon Papio anubis RPL18AP2
Marmoset Callithrix jacchus RPL18AP4
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL18AP1
TTTCCTTTTGCGGGTGGTGGCAAAGGTGGAGAGAAAGCCATGAAGGCCTTGGGCACAGAACAACAGTACAAGGTGGTGTGTCACTGCCTGTCCACCCCCAAATGCCACACACTGCCCCTCTACCACATGCAAATCTTTGCGCCTAATCATGTAGTTGCCAAGTTCCACTTCTGGTACTTCCTATCTCAATTAAAGAAGATGAAGAAGTCTTCAGGGGAGACTGTCAACTGTGGGCAGGTGTTTGAGAAGTACCCACTGTGGGTGAAGAACTTTGGCATCTGGCTGCACTATGACTCCCGGAGCAGCACCCACAACATGTACAGGGAATACCGGGACCTAACCACCATGGGTGCTGTCACCCAGTGCTACCAAGACATGGGCACCCGGTACCGCGTCCGGGCCCACTTCATCCAGATCATGAAGGTGGAGGAGATTGCGGCCAGCAAGTGCTGGTGGCCAGCTGTCAAGCAATTCCACGACTCCAAGATCAAGTTCCTGCTGCCCCACTTGGTGCTGTGCCATCAGCAGAAGCCACGCTTCACCAGGAGACCCAACACCTTCTTCTAGGTACAGGGCCCTCGCCTGGCTGTGCCTCAAATAAACTCAGGAACACCCTGGTG
>XM_004060282.2
GGGTCTTCCGGTAGTGAAGGCCTGGTGAACGGCTGCGCGAAAAAGGACACTTCCTTTTGCGGGTGACGGCGAACGGGGAGAGTACGCCATGAAGGCCTCGGGCACGCTACGAGAGTACAAGGTAGTGGGTCGCTGCCTGCCCACCCCCAAATGCCACACGCCGCCCCTCTACCGCATGCGAATCTTTGCGCCTAATCATGTCGTCGCCAAGTCCCGCTTCTGGTACTTTGTATCTCAGTTAAAGAAGATGAAGAAGTCTTCGGGGGAGATTGTCTACTGTGGGCAGGTGTTTGAGAAGTCCCCGCTGCGGGTGAAGAACTTCGGGATCTGGCTGCGCTATGACTCCCGGAGCGGCACCCACAACATGTACCGGGAATACCGGGACCTGACCACCGCAGGCGCTGTCACGCAGTGCTACCGAGACATGGGTGCCCGGCACCGCGCCCGAGCCCACTCCATTCAGATCATGAAGGTGGAGGAGATCGCGGCCAGCAAGTGCCGCCGGCCGGCTGTCAAGCAGTTCCACGACTCCAAGATCAAGTTCCCACTGCCCCACCGGGTCCTGCGCCGTCAGCACAAGCCACGCTTCACCACCAAGAGGCCCAACACCTTCTTCTAGGTGCAGGGCCCTCGCCCGGGTGTGCCCCAAATAAACTCAGGAACGCCCCGGTG

Publications

PMID - Link Title