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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL35AP12
Plot displaying the genomic locations of a retrocopy (in chr6) and its respective parental gene (in chr7). Each line represents a retrocopy.
Species Gorilla gorilla
Coordinates chr6:135378420-135378749  UCSC
Strand -
Parental Sequence XM_004038287.3
Parental seq. overlap 291 bp
Parental seq. overlap (%) 56.6%
Genomic Region Intergenic
Retrocopy Summary RPL35AP12, located on chr6:135378420-135378749, is a retrocopy of the parental gene RPL35A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL35A
Full Name N/A
Also known as RPL35A
Coordinate chr7:954924-960639
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL35AP3
Bonobo Pan paniscus RPL35AP12
Orangutan Pongo abelii RPL35AP13
Gibbon Nomascus leucogenys RPL35AP6
Green monkey Chlorocebus sabaeus RPL35AP23
Crab-eating macaque Macaca fascicularis RPL35AP9
Rhesus Macaca mulatta RPL35AP9
Baboon Papio anubis LOC101014662P11
Golden snub-nosed monkey Rhinopithecus roxellana RPL35AP12
Chimpanzee Pan troglodytes Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL35AP12
CCTGTGGAGGCCTGCTGGGAACAGGACTTCTTAAAAGGAAGTACGTCTGGAAGGCTGTGTTCCAAGTGCTTTTTTGCTGGCTATAAGCGGAGCCTCCAGAACCAAAGGGAGCGTACAGCTCTTCTTAAAATTGAAGGTGGTTATGCCCAAGATGAAACTGAATTCTATTTGGGCAAGAGATGTGCTTGTGTATACAAAGCAAAGAGCAACACAATGATTCCTGGCAGCAAACCAAACAAAAGCAGAGTAATCTGGGGAAAGGTAACCCGGGCTCACAGGAACAGTGGCATGGTTGCTGCCAAGTTCCATAGCAATCTTCCTGCTAAGGCT
>XM_004038287.3
ATGTTTAATCCCACAAGGCCACGCGGCGGGGCCTCGTCCTTCTCTTCCCGCCATCTTGGCTCCTGTGGAGGCCTGCTGGGAACGGGACTTCTAAAAGGAACTATGTCTGGAAGACTGTGGTCCAAGGCCATTTTTGCTGGCTATAAGCGGGGTCTCCGGAACCAAAGGGAGCACACAGCTCTTCTTAAAATTGAAGGTGTTTACGCCCGAGATGAAACAGAATTCTATTTGGGCAAGAGATGCGCTTATGTATACAAAGCAAAGAACAACACAGTCACTCCTGGCGGCAAACCAAACAAAACCAGAGTCATCTGGGGAAAAGTAACTCGGGCCCATGGAAACAGTGGCATGGTTCGTGCCAAATTCCGAAGCAATCTTCCTGCTAAGGCCATTGGACACAGAATCCGAGTGATGCTGTACCCCTCAAGAATTTAAACTAACGAAAAATCAATAAATAAACGTGGATTTGTGCTCTTGTATTTTTAAGTGGATTAAAAAACTTACTACCTTAAA

Publications

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