Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name NDUFA4P5
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Macaca fascicularis
Coordinates chr1:58222876-58223163  UCSC
Strand +
Parental Sequence XM_005550111.2
Parental seq. overlap 243 bp
Parental seq. overlap (%) 39.1%
Genomic Region Intergenic
Retrocopy Summary NDUFA4P5, located on chr1:58222876-58223163, is a retrocopy of the parental gene NDUFA4. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name NDUFA4
Full Name N/A
Also known as -
Coordinate chr3:110051488-110058250
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens NDUFA4P7
Chimpanzee Pan troglodytes NDUFA4P3
Bonobo Pan paniscus NDUFA4P3
Gorilla Gorilla gorilla NDUFA4P3
Gibbon Nomascus leucogenys NDUFA4P6
Green monkey Chlorocebus sabaeus NDUFA4P17
Rhesus Macaca mulatta NDUFA4P5
Baboon Papio anubis NDUFA4P1
Golden snub-nosed monkey Rhinopithecus roxellana NDUFA4P1
Marmoset Callithrix jacchus NDUFA4P22
Orangutan Pongo abelii Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>NDUFA4P5
TGGTTCTCTCCTTTCCAATAGGAGGCCTCTGCCGCAAACATGCTCTGCCAGATCCTCAGTCAGGCCAAGAAGCATCTGAGGTTAATCCCTCTCCTTGAATTTATTGAAGCTGGAGGTACTGGAGCAACACTGGATGTCTTGCATCTGGCACTGTTCAATCCAGGTGTTAATTGAGGCAGAAACCATAACCCAGAAAGAACACTGGAACAAACTGGGTCCCAATGATTGATACAAGTTCTACTCAGTGAATGTGGATTATAGCAAACTGAAGAAAGAAGGCCCAGATTT
>XM_005550111.2
AAGCAGGCATTGTTAAGGACAGTCGCATTCGGGCCCTCCTGCCGCAAGCTGCCCTTCCAGCCAAGGGTCCTTCAGGTAGGAGGTACTGAGTGACTTTGGAAGTCTGCAGTGTCTCATTGCAGATACTACTTAGCTCAGGGCCTGGTGGCTAGACAGGTTCTCTCCTTTCCAGTCGGAGGCCTCTGCCGCAAACATGCTCCGCCACATCCTCGGTCTGGCCAAGAAGCATCCGAGCTTGATCCCCCTCTTTGTATTTCTTGGAACTGGAGCTACTGGAGCAACACTGTATCTCTTGCGTCTGGCCTTGTTCAGTCCAGATGTTTGTTGGGACAGAAATAACCCAGAGCCCTGGAACAAACTGGGTCCCAATGATCAATACAAGTTCTACTCAGTGAATGTGGATTACGACAAACTGAAGAAGGAACGTCCAGATTTCTAAATGAAATGTTTCACTATAATGCTGCTTTAGAATGAAGGTCTTCCAGAAGCCACATCCGCACAATTTTCCACTTAACCAGGAAATATTTCTCCTCTAAATGCATGAAATCATGTTGGAGATCTCTATTGTAATCTCTATTGGAGATTACACTGATTAATAAATAACTGAAACTTGA

Publications

PMID - Link Title