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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name NDUFA4P13
Plot displaying the genomic locations of a retrocopy (in chr11) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Macaca fascicularis
Coordinates chr11:31755690-31756079  UCSC
Strand +
Parental Sequence XM_005550111.2
Parental seq. overlap 336 bp
Parental seq. overlap (%) 54.3%
Genomic Region Intergenic
Retrocopy Summary NDUFA4P13, located on chr11:31755690-31756079, is a retrocopy of the parental gene NDUFA4. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name NDUFA4
Full Name N/A
Also known as -
Coordinate chr3:110051488-110058250
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens NDUFA4P19
Chimpanzee Pan troglodytes NDUFA4P19
Bonobo Pan paniscus NDUFA4P19
Gorilla Gorilla gorilla NDUFA4P18
Orangutan Pongo abelii NDUFA4P17
Gibbon Nomascus leucogenys NDUFA4P16
Green monkey Chlorocebus sabaeus NDUFA4P7
Rhesus Macaca mulatta NDUFA4P13
Baboon Papio anubis NDUFA4P11
Golden snub-nosed monkey Rhinopithecus roxellana NDUFA4P14
Marmoset Callithrix jacchus NDUFA4P14
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>NDUFA4P13
TTCTCCTTTCCAGTCAGACCTCTGCTGCAAACATGCTCCACCAGATCCTCGGCCAGGCCAAGAAGCTTCCAAGCGTGATCCTCCTCTTAATATTTATTGGAGCTGGAGGTCCTGGAGCAGCACTGTATGTCTTGCATCTGGCACTGTTCAGTCAGATGTTAGTAGGGGCAGAAAGAATAACCCAAAACCCTGAGACAAACTGGGTGCCCATGATCAGCACAAGTTCAACTCAGTGAATGTCTACATTACAGCAAACTGAAGCAAGAAGGCCCAGATTTCTAAATGAAATGTTTCACTCTAAAGCTGCTTAGAATGAAGGTCTTCCAGGAGCCATCCGCACAATTTCCCACTTAACCAGGAAACATTTCTCCTCTAAATATATGAAATCAT
>XM_005550111.2
AAGCAGGCATTGTTAAGGACAGTCGCATTCGGGCCCTCCTGCCGCAAGCTGCCCTTCCAGCCAAGGGTCCTTCAGGTAGGAGGTACTGAGTGACTTTGGAAGTCTGCAGTGTCTCATTGCAGATACTACTTAGCTCAGGGCCTGGTGGCTAGACAGGTTCTCTCCTTTCCAGTCGGAGGCCTCTGCCGCAAACATGCTCCGCCACATCCTCGGTCTGGCCAAGAAGCATCCGAGCTTGATCCCCCTCTTTGTATTTCTTGGAACTGGAGCTACTGGAGCAACACTGTATCTCTTGCGTCTGGCCTTGTTCAGTCCAGATGTTTGTTGGGACAGAAATAACCCAGAGCCCTGGAACAAACTGGGTCCCAATGATCAATACAAGTTCTACTCAGTGAATGTGGATTACGACAAACTGAAGAAGGAACGTCCAGATTTCTAAATGAAATGTTTCACTATAATGCTGCTTTAGAATGAAGGTCTTCCAGAAGCCACATCCGCACAATTTTCCACTTAACCAGGAAATATTTCTCCTCTAAATGCATGAAATCATGTTGGAGATCTCTATTGTAATCTCTATTGGAGATTACACTGATTAATAAATAACTGAAACTTGA

Publications

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