Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPS25P3
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr11). Each line represents a retrocopy.
Species Gorilla gorilla
Coordinates chr3:145856080-145856494  UCSC
Strand -
Parental Sequence XM_019036121.1
Parental seq. overlap 350 bp
Parental seq. overlap (%) 43.2%
Genomic Region Intergenic
Retrocopy Summary RPS25P3, located on chr3:145856080-145856494, is a retrocopy of the parental gene RPS25. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS25
Full Name N/A
Also known as RPS25
Coordinate chr11:102174716-102177674
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPS25P6
Chimpanzee Pan troglodytes RPS25P4
Bonobo Pan paniscus RPS25P4
Orangutan Pongo abelii RPS25P3
Gibbon Nomascus leucogenys RPS25P7
Green monkey Chlorocebus sabaeus RPS25P7
Crab-eating macaque Macaca fascicularis RPS25P5
Rhesus Macaca mulatta RPS25P5
Baboon Papio anubis RPS25P2
Golden snub-nosed monkey Rhinopithecus roxellana RPS25P1
Marmoset Callithrix jacchus RPS25P14
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS25P3
ATGCTGCCCAAGGACGATAGGAAGAAGAAAGACACTGGAAAGTCAGACAAGAAAGACAGAGACCCAATGAACAAATCTGGTGGCAAGGACAGAAAGAAGAAGTGGTCCAAAGGCAAAGTTTGGGACAAGCTCAATAACCTAGTCTTGTTTGACAAAGCTACATATGACATACTCAGTAAGAAAGTCCCAACAGTAAGCTTATAACCCCAACTGAGGTCTCTGAAAGACTGAAAATTAAAAGTTGTCTGTCCAGGGCAGCCTTTCAGGAGCTGTTTAGTAACAGACTTATCAAACTAGTTTCAGTGCACAGAGCTCAAATAATTTACACCAGAAACACCTAGTGCGGAGGTGCTCCAGCTTCTGGTGAAGATGCAGGAACAGGCCCAACAAATTGTATATTTGGAa
>XM_019036121.1
TGCAGCTACCTGCGGTACGTGCGCACTGGGAGCTACACGCTTGGGCATAAGTAGTGCCGGAAAGTTAGCTGCCGAGACCTGGTGGATTGCTTTTCGTTTATCAGTGCAGGAAAACAGTGCTATAGTACTGCGTCACAACTAGCGCAGACTCCGGCAGTATTTACGCGGTGCGGCTTGGAAACTAGAATCCGCTTCCTGTCTTCCGCCTCAGGCTAGAGGGCGAGCGCTTCGCCGTGGGACTTCCTCTGCCTGGCTCCGCCTCTTGCCCCGGAAGTACTCACAGAGGACGGTGGTTTTTGGGCCCGTTTCTGAGCAGCGCTTCCTTTTAGTCCGACATCTTGGCGAGGCTGTGGTGTCTGTTGCTACTCTCCGAGCTTCGCAATGCCGCCCAAGGACGACAAGAAGAAGAAGGACGCTGGAAAGTCGGCCAAGAAAGACAAAGACCCAGTGAACAAATCCGGGGGCAAGGCCAAAAAGAAGAAGTGGTCCAAAGGCAAAGTTCGGGACAAGCTCAATAACTTAGTCTTGTTTGACAAAGCTACCTATGACAAACTCTGTAAGGAAGTTCCCAACTATAAACTTATAACCCCAGCTGTGGTCTCTGAGAGACTGAAGATTCGAGGCTCCCTGGCCAGGGCAGCCCTTCAGGAGCTCCTTAGTAAAGGACTTATCAAACTGGTTTCAAAGCACAGAGCTCAAGTAATTTACACCAGAAATACCAAGGGTGGAGATGCTCCAGCTGCTGGTGAAGATGCATGAATAGGTCCAACCAGCTGTACATTTGGAAAAATAAAACTTTATTAAATCAAA

Publications

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