Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPS27AP3
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr2A). Each line represents a retrocopy.
Species Gorilla gorilla
Coordinates chr1:196460503-196460686  UCSC
Strand -
Parental Sequence XM_004029250.3
Parental seq. overlap 150 bp
Parental seq. overlap (%) 18.3%
Genomic Region Intragenic (SPATA17)
Retrocopy Summary RPS27AP3, located on chr1:196460503-196460686, is a retrocopy of the parental gene RPS27A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS27A
Full Name N/A
Also known as RPS27A
Coordinate chr2A:71552666-71555852
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens UBBP2
Chimpanzee Pan troglodytes UBBP1
Bonobo Pan paniscus UBA52P1
Orangutan Pongo abelii LOC100451913P1
Gibbon Nomascus leucogenys UBBP1
Green monkey Chlorocebus sabaeus UBA52P12
Crab-eating macaque Macaca fascicularis UBA52P2
Rhesus Macaca mulatta UBA52P2
Baboon Papio anubis LOC100998924P1
Golden snub-nosed monkey Rhinopithecus roxellana UBA52P8
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS27AP3
CAAAATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAGTGACACCATCGAAAATGTGAAGGCCAATATCCTGGATAAGGAAGGCATCCTTCCCGACCAGCAGAGGCTCATCTTTGCAGGCATGCAGCTAGAAGATGGCTGCACTCTTTCTGACTACAAC
>XM_004029250.3
CCTCCTTTTAAAAATTCTCTTAGCCACGTTGATTATACGGGAAAAGCCTTTTTAAAACATTTTTTACGTTGCTTAAACCTACAATTTCGAAAGCATTCCGACGGCTAAAGTGAGAAATAAGCCCACGCTAGGGAGAGGAGAAACGAAGTTCACGTCCTAGTTTGGCACCGGGTTGGATTGTCGCTGGGACGGCAGTCAGGCATTTGGTGTGGTCGCCTAAGGGGTGGGTCCTTCGGCGGGAGCTCCGGGAAACCCCGTGGGCCTGCGCGGCGTTCTTCCTTTTCGATCCGCCATCTGCGGTGGAGCCGCCACCAAAATGCAGATTTTCGTGAAAACCCTTACGGGAAAGACCATCACCCTCGAGGTTGAACCCTCGGATACGATAGAAAATGTAAAGGCCAAGATACAGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACTTTGTCTGACTACAATATTCAAAAGGAATCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGGTGCTAAGAAAAGGAAGAAGAAGTCTTACACCACTCCCAAGAAGAATAAGCACAAGAGAAAGAAGGTTAAGCTGGCTGTCCTGAAATATTATAAGGTGGATGAGAATGGCAAAATTAGTCGCCTTCGTCGAGAGTGCCCTTCTGATGAATGTGGTGCTGGGGTGTTTATGGCAAGCCACTTTGACAGACATTATTGTGGCAAATGTTGTCTGACTTACTGTTTCAACAAACCAGAAGACAAGTAACTGTATGAGTTAATAAAAGACATGAACTAACA

Publications

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