Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SCOCP1
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr4). Each line represents a retrocopy.
Species Gorilla gorilla
Coordinates chr1:121385848-121388333  UCSC
Strand +
Parental Sequence XM_004040412.3
Parental seq. overlap 1557 bp
Parental seq. overlap (%) 75.7%
Genomic Region Intergenic
Retrocopy Summary SCOCP1, located on chr1:121385848-121388333, is a retrocopy of the parental gene SCOC. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SCOC
Full Name N/A
Also known as SCOC
Coordinate chr4:137853770-137987126
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes SCOCP1
Bonobo Pan paniscus SCOCP1
Orangutan Pongo abelii SCOCP1
Gibbon Nomascus leucogenys SCOCP2
Marmoset Callithrix jacchus SCOCP3
Human Homo sapiens Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SCOCP1
TGTCAGTTGGTCCAAGTGTCCGGGTCTGAGGCATCCGCCCAAACCCTCCCACTCCTGCCCCCTCAAACTGGAAGAACATTCATCATGCATTTTGTGTCCAAGGCTCAAAAGTTTGTTACCCAAGATGATGAGTGCTGACATGGATGCAGTTGATGCTGAAAATCAGGTGGAGATAGAGGAAAACAACACGACTTATTAATCAAGTGTGGAAATTCCAACTCATACTTGAAGATCTCTCTGCAAGAGCAAACGCAGATAAGGAAGAAAATCTGAAGCTAAAATCAGAAAACCAAGTTGTTGGGCAACATATAGAAAATCTCATGTCAGCTTCTGGTGTTTTTCAAACAACTGACACCGAAAGCAAAAGAAAATAAGGAATTGACACACTTCTGTTTTACAGAATTGCTGCTGATAATTTTTTCTTTTAAACTTGGACAGATTCCAAAAAGTTACAGCATCTTTGTGGCTTCATTGAATATTTATGAAGAAAATGTCAGGTGAGGCAAAATTAACAGCATTAACAGGAGACTTCCCTAAGTTTGTATATTATATTAGTCTATGAAAACATGCAAATGAATTGTAGAAACTTTATCATTACAGTTGCACATATTTTGCATATATTTATGAAACTTAAAGATGAATGTTTTATCAAATTTTCCTTGATTTGTAGATTTAGCACTGTCTTTTATTAGACGCTTACTAAGATATACAAGAAAAATAACCACGCGTTGTGAAAAAGTGACTGGAATCATGCACTGAATGCGCAGCCTCATGTACCCTGTCCGTCATCCTCGAAGGAAAGAATTGGTTTCACATTTGTAAAAGTCATTTTAATAGTTAATCATCTCAGAGAGTAACCTGCACTTTAATTGTTGAAACTTAACCAAAATAAGATACAGAAAGTATCTGTATCTCAGAAACAGCTAGGGCTTGTCATTTTTTATATTTAGTATTAAGACAAGAATGCTGGTTTCTTTTTAATCCATTTAAAACAGAGGGAAGCTATAAAAATAAAGATTTTTCTTTGAGGCTGAATTGTCAACTTAGGAAGATTTGTTGTTAAAAATTTGTTTTTGCACAAAGTAACTCACTTCATCTTATCTGGAAAGATAAGTTGGTCAAGTGTATGTTTAAAATACAAAATTTAGAGGAAAAATAGAAATAGGGTGAAAAAGTACTTGGTAAACAGTAGTGATGAACTGTGAATATTTTCCCTCCAGATTTTGTTATCCCTGGCACAGAGTAGGTCTTTTGGAAAATATATATGAAAGTGGATTAAGTTTGACTAACCTTATGTAAGCCACATCTAGAAGAGAACAGTTACAAAGAGTTTGATCTCTAGATTTATTTGTACCCAGCAGATCAACTTTTGCAAAATTCCTTCGCAGTGCAGTAGTATTAGAATTGTGAATGAAAGAGGAGTGTTTCACATATATGCTTATTGACAATCTTGCTCAGTATTTTATCTTACTTGTTCTCTCAGAATTTTCTGTCAACTCAACTACTTGATTTGCAGTCATCCTTTGTTATTATCCTTTAACAAGcTGGCCTCAAATTTTAAAAATTTATAGGTTCCATTTGGTAAAGAAATCAGTATCAGAAGTAATGCTAAAATCTTATAATAGGAAAAGAGAGCCACTAATATAGCCTATGGTTATTAGATTTGGGCTACTTTTAATCATGGAATAAGAATGTATTGGTGTAAGAGTTGATGAATGACTTTACCTGTATGAATTAGAATATTCAAACTGCAAATATTTTGCATCCCTTTTGTGACCTAATTTACAGACGTTTAAGTTGTGCTGCAATTCTGCTTTGCCATTTAATAAAAAGCTGTTTCAGA
>XM_004040412.3
TTGAGATTGGACGACTGGGGGGAGGCGGGCAGCTAATGCGCAGGCGTGTATTCTCGAGTCAGGATTGGCGGGCGAGCAGCTGGGACGGGACGGGATTCTTCTCACGGCGCACGTTCTGTGGGCGGAGTGGGCGGAGCTGCCGGCGTCAGTTGGTCCAAGTGTCCCGGCTTGGGGTGTCGGCCGGATCCCTCCCTCTCCCGGCGCCTCAAGCGGAAGACCATTCATCAAGAATTTTGTATCCAAGGCCCAAAAGTTTGTTACCCAAGATGATGAATGCTGACATGGATGCAGTTGATGCTGAAAATCAAGTGGAACTGGAGGAAAAAACAAGACTTATTAATCAAGTGTTGGAACTCCAACACACACTTGAAGATCTCTCTGCAAGAGTAGATGCAGTTAAGGAAGAAAATCTGAAGCTAAAATCAGAAAACCAAGTTCTTGGACAATATATAGAAAACCTCATGTCAGCTTCTAGTGTTTTTCAAACAACTGACACAAAAAGCAAAAGAAAGTAAGGGATTGACACCCTTCTGTTTTATGGAATTGCTGCTGATCATTTTTTCTTTAAAACTTGGATAGATTCCAAAAGTTACAGTACCTTTGTTTGTGGCTTCATTGAATATTTATGAAGATAATGTCAGATGTAGACAAAAATAACACAATAACAGGAGACTTCCATAAGTTTGTGTATTATGTTAGTCTATGAAAACGTGCAAATGTATTGTAGAGACTTTATAATTAGAATTGCATATATTTATGAAACTTAAAGATGAATGTTTTATTGAATTTGTAGGTTTAGCACTGTCTTTTATTATAGGATTAGTAAGATATACAAGAAAATAACCACCATGTTGTGAAAAAGTGGCCAAAATCATGTACTAAATGCACAGCTTTATGTACCCTGTCCACCATCTTGTGCCTCTTCTCCATTTGCCTCTTCCTTCCTATTTCCCTTCCGCTAAGGAAAAAAATTGGTGTCACATTTGTAAAAGTAATTTTAATAGTTAATCATCTCTGAGAGTAACCTGTATTTTAATTGTTGAAACTTAACCAAAATAAGATACCGTCTCAGCTAGGGCTTGTCATTTGTGTATTTAGTGTTAAGATAGGAATGCTAGTGTCTCTTTAATTAATTGGAAATAGATGGAGGCTAAAAATGAAGGTTTTTCTTTGAAACTGAATTATCTTGGGAATATTTGTTGTTAAAAACTTCTTTTTGCCCAAAATAACTCATTTTGTATTATCTGAAAATATATAATTTCTGGTCATGTGTATGTTTAAAATAGAAAATTTTGAGGAAAAATGGAAATAGGGTGGAAAAGTACTCGGTAAACAGTAGTAACCAAATATTTTCACTCCAGATTTGTGTTTTCTCTGGCACAGAGTAGATCTTTTGGGAAATATATATGAAAGTGGATTAAGTTTGACTACCCTTATGTAAGCCACATCTGGATGAGAACAGTTACAAAGAGTTTGGTCTCTAAGTTGATTCGTACCCAGTGGGTCAACTTCTGCAAAATTCCATAACGGTGTATTAGTATTAGAATAGTGAATAAAATGGGAAAGTTTTACATGTATACTTATTATCTTGCTCAGTATTTTATCTCACTTGTTCTAGAATTTTCTGTAAACCCTGCTACTGGGTTTGAAGAGTTTTAGTCATCCTTTAACAATTTTTAAAAATTTAGCTTTTAGATTCCATTTGGTAAGGAAATCAATATTGGAAGTATTGCTAAAATCTTATAATATGAAAAGAGATCCACTAATATAGCTTATGGTTATTAGATTTGGGCTTTTAATCATGGAATAATCTTATGTATTGGTGTAAGAGTTGATGAATGACTTTAGCTGTGTGAATATGTAATAGTCAAACTGCAAACATTTTGCATCCCTTTTGTGACCTAATTTACAGACATTTAAATTGTGTTGCAGTTCTGCTTTGCCATTTAATAAAAAGCTATTTCAGAGGTTG

Publications

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