Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SNRPFP2
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Gorilla gorilla
Coordinates chr1:21729569-21729901  UCSC
Strand +
Parental Sequence XM_004053705.3
Parental seq. overlap 291 bp
Parental seq. overlap (%) 37.8%
Genomic Region Intragenic (LOC101148937)
Retrocopy Summary SNRPFP2, located on chr1:21729569-21729901, is a retrocopy of the parental gene SNRPF. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SNRPF
Full Name N/A
Also known as SNRPF
Coordinate chr12:91884933-91892468
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens SNRPFP2
Chimpanzee Pan troglodytes SNRPFP2
Bonobo Pan paniscus SNRPFP2
Orangutan Pongo abelii SNRPFP1
Gibbon Nomascus leucogenys SNRPFP6
Green monkey Chlorocebus sabaeus SNRPFP2
Crab-eating macaque Macaca fascicularis SNRPFP1
Rhesus Macaca mulatta SNRPFP1
Baboon Papio anubis SNRPFP2
Golden snub-nosed monkey Rhinopithecus roxellana SNRPFP7
Marmoset Callithrix jacchus SNRPFP2
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SNRPFP2
GAGCCTGCAGCATTTGCCCATAGTTACGGTAAGTCTACCCCTCAATCCTGAAGCTTTCCTCAGTGGGTTAACAGGAAAGCCGGTGATGCTGAAACAAAGTGGGGAATGGAGTACAAGGGCTATCTGGCATCTTAGATGGCTACATGAACATGCAGCTTGCAAATAAGAGAAATACATAGGTGGGGAGCTGTCTGGACATCTGGGTGAAGTTTTAATACGGTATAAAAATGTCCTTTATAGTAGAGGTATGGAAGAAAATGGGGGAAGTGAGAGAACAGCATCTTTTCTGGGGGATTTTGAAAATATAGATTTCTAGACAATAAAGATGTGTTT
>XM_004053705.3
AATACAAAGTAAATCCCCATTAGCCAAGTTGGGGAGAAGTCACATCCGTTACACAGCCTCTCCCAGACCGCCCTCTAGGAAGGACACCACATTTAAAAACACCGGCCTGCCTCCAGTCCTTGGCTGCCTCACAGCGATCCTCAGAGCCGGTTTCCCAAGGTCCGCGCGCCGCCTGCAAGGCGTAAACCCAAGCCGCTGCAGGTTGCTAGGAGATACTGGTCCAGCCATCTCCTCCAATCAGCACGCATCTCTTTGCGTCCAATCACAGAGGCAGGAAGGGCCGTGGTGGGAGGTGAAAGGTCATACTCCTGTTTGGCGGCCATTTCTCTTGAAACTCTGCGGCTCGGGACCTGCGGTACCTGCTGTAGTCACGAGGGACGGGCGGCGGCCTGGTCGGCAGAGAGTAGCCTGCAACATTCGGCCGTGGTTACGATGAGTTTACCCCTCAATCCCAAACCTTTCCTCAATGGACTAACAGGAAAGCCAGTGATGGTGAAACTTAAGTGGGGAATGGAATACAAGGGCTATCTGGTATCTGTAGATGGCTACATGAACATGCAGCTTGCAAATACAGAAGAATACATAGATGGAGCTTTGTCTGGACATCTGGGTGAAGTTTTAATAAGGTGTAATAATGTCCTTTATATCAGAGGTGTGGAAGAAGAGGAAGAAGATGGGGAAATGAGAGAATAGCATCTTTTGTGGGGGATTTTTTTTTTATATATATTTCTAGACAATAAAGATTTGTTTGTTTTTCAACTTGA

Publications

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