Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name NOP56P5
Plot displaying the genomic locations of a retrocopy (in chr17) and its respective parental gene (in chr10). Each line represents a retrocopy.
Species Macaca fascicularis
Coordinates chr17:76146614-76146787  UCSC
Strand +
Parental Sequence NM_001284554.1
Parental seq. overlap 152 bp
Parental seq. overlap (%) 6.3%
Genomic Region Intragenic (GPC6)
Retrocopy Summary NOP56P5, located on chr17:76146614-76146787, is a retrocopy of the parental gene NOP56. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name NOP56
Full Name N/A
Also known as NOL5A
Coordinate chr10:59854730-59860924
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens NOP56P4
Chimpanzee Pan troglodytes NOP56P3
Bonobo Pan paniscus NOP56P3
Gorilla Gorilla gorilla NOP56P3
Orangutan Pongo abelii NOP56P3
Gibbon Nomascus leucogenys NOP56P1
Green monkey Chlorocebus sabaeus NOP56P1
Rhesus Macaca mulatta NOP56P5
Baboon Papio anubis NOP56P5
Golden snub-nosed monkey Rhinopithecus roxellana NOP56P4
Marmoset Callithrix jacchus NOP56P2
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>NOP56P5
TGCATCTGCAGAAAACAGCAGTAGTATTCTGAAGGAGTATGAGGAGATGGGTGAAAAACCCAAAAGAGATAAAAGCAGAAGCTCCAGGAGGCTCCTCAGGAGAATGAAATGGAAAGCCCATTTCTCTCTTTCTCCAAACTCAAGAAAAAGAAATATTTTTCCAAGGAGGAGTTG
>NM_001284554.1
AGGCTCGTCCCCGAGTAGGGGACGGGAACGGATgggtcccggggacttggggcgcagggtctggggcccgaggccacgggCGCAGCGGGCAGCCGGCTAGGCAGCGGTCTCTGGGATGGACGCCGTGCCCTACGCGGAGCCTCCCACCCCGACTTCACCCATCTCTGCTGCCCGCAACTTATATGACAAGAACATCTGGAACTGGACTATTATACCGAAAGGGCCTACCCATGTCTTTTCGCTGCCAGCAAGGCCCGACTCCGGGCCGCGCGTCCCCGGCAACCGCGCCCGCCCACGCAGCTGCAGAGGCCAGAGAAGGCCTGCTCGCCCGCGCTCGGCGCCACCCAGCCCGCGCTCCGGGCGATACCACCCCGGGCGGCCCCTCTAAAGGCCGGGAGATGGTGTCGTCCCCGGCCTCCGATTGGTCTGCGGGGCGGGGGCGTGGCCTCTGGAGCCTGGTTCCGCGCGCCGGAGCGCGCTAGCCGCATTGCGAGCCGAACCCGGGAGCAGGCGCCATGGTGCTGTTGCACGTGCTATTTGAGCATGCGGTCGGCTACGCGCTGCTGGCACTGAAGGAAGTGGAGGAGATCAGTCTGCTGCAGCCGCAGGTGGAGGAGTCCGTGCTCAACTTGGGCAAATTCCACAACATCGTTCGTCTGGTGGCCTTTTGTCCCTTTGCCTCGTCCCAGGTTGCCTTGGAAAATGCGAACGCCGTGTCTGAAGGGGTTGTTCATGAGGACCTCCGCCTGCTCTTGGAGACCCACCTGCCATCCAAAAAGAAGAAAGTACTCTTGGGAGTTGGGGATCCCAAGATTGGTGCTGCAATACAGGAGGAGTTAGGGTACAACTGCCAGACTGGAGGCGTCATAGCTGAGATCCTGCGAGGAGTTCGTCTGCACTTCCACAATCTGGTGAAGGGTCTGACTGATCTGTCAGCTTGTAAAGCACAGCTGGGGCTGGGACACAGCTATTCCCGTGCCAAAGTTAAGTTTAATGTGAACCGAGTGGACAATATGATCATCCAGTCCATTAGCCTCCTGGACCAGCTGGATAAGGACATCAATACCTTCTCTATGCGTGTCAGGGAGTGGTATGGGTATCACTTTCCGGAGCTGGTGAAGATCATCAACGACAATGCCACATACTGCCGTCTTGCCCAGTTTATTGGAAACCGAAGGGAACTGAATGAGGAAAAGCTGGAGAAGCTGGAGGAGCTGACAATGGATGGGGCCAAGGCTAAGGCTATTCTGGATGCCTCACGGTCCTCCATGGGCATGGACATATCTGCCATTGACTTGATAAACATCGAGAGCTTCTCCAGTCGTGTGGTGTCTTTATCTGAGTACCGCCAGAGCCTACACACTTACCTGCGCTCCAAGATGAGCCAAGTAGCCCCCAGCCTGTCAGCCCTAATTGGGGAAGCGGTAGGTGCACGTCTCATCGCACATGCTGGCAGCCTCACCAACCTGGCCAAGTATCCAGCATCCACAGTGCAGATCCTTGGGGCTGAAAAGGCCCTGTTCAGAGCCCTGAAGACAAGGGGTAACACACCAAAATATGGACTCATTTTCCACTCCACCTTCATTGGCCGAGCAGCTGCCAAGAACAAAGGCCGCATCTCCCGATACCTGGCAAACAAATGCAGTATTGCCTCACGAATCGATTGCTTCTCTGAGGTGCCCACGAGTGTATTTGGGGAGAAGCTTCGAGAACAAGTTGAAGAGCGACTGTCCTTCTATGAGACTGGAGAGATACCACGAAAGAATCTGGATGTCATGAAGGAAGCAATGGTTCAGGCAGAGGAAGCGGCTGCTGAGATTACTAGGAAGCTGGAGAAACAGGAGAAGAAACGCTTAAAGAAGGAAAAGAAACGGCTGGCTGCACTTGCCCTCGCATCTTCAGAAAACAGCAGTAGTACTCCAGAGGAGTGTGAGGAGACGAGTGAAAAACCCAAAAAGAAGAAAAAGCAAAAGCCCCAGGAGGTTCCTCAGGAGAATGGAATGGAAGACCCATCTATCCCTTTCTCCAAACCCAAGAAAAAGAAATCTTTTTCCAAGGAGGAGTTGATGAGTAGTGATCTTGAAGAGACCGCTGGCAGCACCAGTCTTCCCAAGAGGAAGAAGTCTTCACCCAAGGAGGAAACAGTTAATGACCCCGAAGAGGCAGGCCACAGAAGTGGCTCCAAGAAAAAGAGGAAATTTTCCAAAGAGGAGCCAGTCAGCAGTGGGCCTGAAGAGGCAGCTGGCAAGAGCAGCTCCAAGAAGAAGAAAAAGTTCCATAAAGCATCCCAGGAAGATTAGAATGCAAATGGACATTCTCTGGGAGGTGGGACATACCATAGCCCAAGGTGACATCTTCCACCCTGTGCCCTGTTCCCCAATAAAAACAAATTCACAAAA

Publications

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