Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ACTBP8
Plot displaying the genomic locations of a retrocopy (in chr6) and its respective parental gene (in chr17). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr6:57384392-57386055  UCSC
Strand +
Parental Sequence XM_030796883.1
Parental seq. overlap 1473 bp
Parental seq. overlap (%) 76.4%
Genomic Region Intragenic (FRMD5)
Retrocopy Summary ACTBP8, located on chr6:57384392-57386055, is a retrocopy of the parental gene ACTB. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ACTB
Full Name N/A
Also known as ACTB
Coordinate chr17:31183429-31186998
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ACTBP7
Chimpanzee Pan troglodytes ACTBP16
Bonobo Pan paniscus ACTA1P1
Gorilla Gorilla gorilla LOC101127752P15
Orangutan Pongo abelii ACTBP19
Green monkey Chlorocebus sabaeus ACTBP18
Crab-eating macaque Macaca fascicularis ACTBP11
Rhesus Macaca mulatta ACTBP11
Baboon Papio anubis ACTBP9
Golden snub-nosed monkey Rhinopithecus roxellana ACTBP10
Marmoset Callithrix jacchus ACTBP27
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ACTBP8
TGAGACCGTGTCCACCCTGCGAGCACAGAGCCTTGCCCTCGCCTCTCTGCCACCCGTCCACACCCGCCGCCAGCTCACCATGGATGATGATATCACCATGCTTGTCGTTGACAACGGTGCTGGCATGTGCAAGGCCAGCTTTGCAGGTGACGATGCCCACCCCGGGCCGTCTTCCCCTCCATCGTGGGGCACCCCAGGCACcagggcgtgatggtgggcatgGGTCAGAAGGACTCCTATGTGGGCGACGAGGCCCAGAGCAAAAGAGGCATCCTGACCCTGAAGTACCCCATCAAGCAGGACATTGTCACCACTTGGGACGACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTGTGTGTGGCTGCCAAGGAGCACCCCATGCTGCTGACCAAGGCCCCCCTGAGCCTCAAGGCCAACCACAAGAAGATGACCCAGATCATTTTTGAGATCTTTGACAGGCCAGCCATGTACATGGCCATCCAGGCCGTGCTGCCCCTGTACACCTCTGGCCGTACCACTGACATCGTGATGGACTATGGTGACGGGGTCACCCACACTGTGCCCATCTATGAGGAGTATGCCCTCCCCTACGCCATCTTGCATGTGGACCTGGCTGGCCAGGACCTGACTGACTACCTCATAAAGATCCTCACCTAGCGCAGCTACATCTTCACCGCCACAGCCAAGCGGGAAATTGTGCATGACATCAAGGAGAAGCTGTGCTACATCACCCTGGACTTCAAGCAGGAGATGGCCATggtggcctccagctcctcccTGGAGATAGCTACAAGCTGCCTGACGGCCAGGTCATCACCATCGGCAACAAGCAGTTCCACTGCCCTGAGGCGCTCTTCTAGCCTTCCTTCCTATGCATGGAATCCCGTGGCATCCATGAAACTACCTGCAACTCCATCATGAAGTGTGATGTGGACATCCTCAAAGACCTGTATGCCAACACAGTGCTGTCTAGCGGCACTACCACATACCCTGGCATCGCTGATAGGATGCAGAAGATCACCACCCTGGCGCCCAGCACAATGAAGATCAAGATCATTGCTCCTCCCAAGCGCAAGTACTCCGTGTGGATCGGCAGCTCCATCCTGGCCCGGCTGTCCACTGTCCAGCAGATGTGGATCAGCAAGCAGGAATACGATGAGTCAGGCACCTCCATCATCCACAGCAAATGCTTCTGGGCGCACTGTGACTTAGTTGCATTACACCCTTTCTTGACAAAACCTAACTTGTGTAGAAAACAAGATGAGATTGGCatgacttggcttgaCTCAGGATTTAAAAACTGGAATGGTGAAGGTGACAGCAGTTGGTTGGAGTGAGCATCCTCCAAAGTTCTACAGTGTGGCCAGGGACTTTGATtgtacattgttctttttttaatagtcatTCCAAATATCGTGAGATGCGTTGTTACAGGAAGTCCCTTGCCCTCCTAAAAGCTACCCCACTTCTCTCTAAGGAGAATGGCCCAGTCCTCTCCCATGTCCACACAGGGGAGGTGATAGCATTGCTTTCATGTAAATTATGTAatgcaacattttttaaatctttgccttaatacttctttattttgttttattttgaatgatcAGCCTTCATGGCCCCCCTT
>XM_030796883.1
GAGTGAGCGGCGCGGGGCCAATCAGCGCGCGCCGTTCCGAAAGTTGCCTTTTATGGCTCGAGCGGCCGCAGCGGCGCCCTATAAAACCCGGCGGCGCGACGCGCCACCACCGCCGAGACCGCGTCCGCCCCGCGAGCATAGAGCCTCGCCTTTGCCGCTCCGCCGCCCGTCCACACCCGCCGCCAGCTCACCATGGATGATGATATCGCCGCACTCGTCGTCGACAACGGCTCCGGCATGTGCAAGGCCGGCTTCGCGGGCGACGATGCCCCCCGGGCCGTCTTCCCCTCCATCGTGGGGCGCCCCAGGCACCAGggcgtgatggtgggcatgGGTCAGAAGGATTCCTATGTGGGCGACGAGGCCCAGAGCAAGAGAGGCATCCTCACCCTGAAGTACCCCATCGAGCACGGCATCGTCACCAACTGGGACGACATGGAGAAGATCTGGCACCACACCTTCTACAATGAGCTGCGTGTGGCTCCCGAGGAGCACCCTGTGCTGCTGACCGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAGATCATGTTTGAGACCTTCAACACCCCAGCCATGTACGTGGCTATCCAGGCTGTGCTGTCCCTGTACGCCTCTGGCCGTACCACTGGCATCGTGATGGACTCCGGTGACGGGGTCACCCACACTGTGCCCATCTATGAGGGGTATGCCCTCCCCCATGCCATCCTGCGTCTGGACCTGGCTGGCCGGGACCTGACTGACTACCTCATGAAGATCCTCACCGAGCGCGGCTACAGCTTCACCACCACGGCCGAGCGGGAAATCGTGCGTGACATTAAGGAGAAGCTGTGCTACGTCGCCCTGGACTTCGAGCAGGAGATGGCCACGGCGGCTTCCAGCTCCTCTCTGGAGAAGAGCTACGAGCTGCCCGATGGCCAGGTCATCACCATTGGCAACGAGCGGTTCCGCTGTCCTGAGGCGCTCTTCCAGCCTTCCTTCCTGGGCATGGAGTCCTGTGGCATCCACGAAACTACCTTCAACTCCATCATGAAGTGTGACGTGGACATCCGCAAAGACCTGTACGCCAACACAGTGCTGTCTGGTGGCACCACCATGTACCCTGGCATTGCCGACAGGATGCAGAAGGAGATCACTGCCCTGGCACCCAGCACGATGAAGATCAAGATCATTGCTCCTCCTGAGCGCAAGTACTCCGTGTGGATCGGCGGCTCCATCCTGGCCTCGCTGTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGAGTATGACGAGTCCGGCCCCTCCATCGTCCACCGCAAATGCTTCTAGGCGGACTGTGACTTAGTTGCGTTACACCCTTTCTTGACAAAACCTAACTTGCGCAGAAAACAAGATGAGATTGGCAtggctttatttgttttttttgttttgttttggtttttttttttggcttgactCAGGATTTAAAAACTGGAACGGTGAAGGTGACAGCAGTCGGTTGGAGCGAGCATCCCCCAAAGTTCACAATGTGGCCGAGGACTTTGATTGCacattgtttttttaatagtcatTCCAAATATCATGAGATGCATTGTTACAGGAAGTCCCTTGCCATCCTAAAAGCCACCCCACTTCTCTCTTAAGGAGAATGGCCCAGTCCTCTCCTGAGTCCACACAGGGGAGGTGATAGCATTGCTTTCGTGTAAATTATGTAatgcaaaatttttttaatcttcgccttaatacttttttattttgttttattttgaatgatgAGCCTTCGTGcccccccttcccctttccccctttTTTGTCCCCCAACTTGAGATGTATGAAGGCTTTTGGTCTCCCTGGGAGTGGGTGGAGGCAGCCAGGGCTTACCTGTACACTGACTTGAGACCAGTTGAATAAAAGTGCACACCTTAAAAATGA

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