Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ARL2BPP7
Plot displaying the genomic locations of a retrocopy (in chr14) and its respective parental gene (in chr2). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr14:4287314-4289059  UCSC
Strand -
Parental Sequence XM_004093174.3
Parental seq. overlap 1440 bp
Parental seq. overlap (%) 65%
Genomic Region Intergenic
Retrocopy Summary ARL2BPP7, located on chr14:4287314-4289059, is a retrocopy of the parental gene ARL2BP. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ARL2BP
Full Name N/A
Also known as ARL2BP
Coordinate chr2:63010054-63018905
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ARL2BPP8
Chimpanzee Pan troglodytes ARL2BPP7
Bonobo Pan paniscus ARL2BPP7
Gorilla Gorilla gorilla ARL2BPP3
Orangutan Pongo abelii ARL2BPP7
Green monkey Chlorocebus sabaeus ARL2BPP4
Crab-eating macaque Macaca fascicularis ARL2BPP6
Rhesus Macaca mulatta ARL2BPP6
Baboon Papio anubis ARL2BPP7
Golden snub-nosed monkey Rhinopithecus roxellana ARL2BPP7
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ARL2BPP7
TTAGAAGAAGAGAGCTTTGATCTGTCCTTCTCCGCCTCTGATGCAGAATTTGATGCTGTGGTTGCATAATTAGAGGACATTGTCATGGATGAAAAGTTCCATTtattacagggaaatttatagacaAGTACTACCTGGAGTTTTGAGGACACGGAAGAGAATAAACTAACCTACGTgcctatttttaataaatatatttttttgtcaGAAAAAATATGTTGAAGAATAACCTCTGTAGCAGATTCCTGGATTCAACGTAGCGGTTTTCACAACTATGTTACAGCATCATAAAGATGAAGTGGCTGGTGGCATATTCGACATGCTGCTCACCTTTACCAATGTTTtggcttttaaataaatgtttttggacCACAGAGCAGAAAAAGAAGGCTGAGGACTGGACTTAAGCAGAGGTCCAGTGGTGACTTTGTTGTGCAAATCATCTATACCAGCTTTCCAGAACAATCTGCAACACTAGGTCCTACCTCCAGCCAATAAATGGGATCATTCTGGATGTCACCGACCCAATAAGCCAACATAGTCTGCTCATGGTGATGACAGAAGAATATGTCTTGGAAGGACTGACTCTGTTCTGCAATTCTTCATTCATACTAAGTATCAATAGGTCAAAACCAAAATGACCTAACCCTCCTGGACCTATTTCTCCTGAAACGCCTTATTGTATTCATTAACCTTAAGAATCCTCCCCACTTAGTAACCCTGGTACTCCTCACCTCTTTAAGTAGGCACCTCTCTCAGGTGTCTCTGAGTTCAACTCCTCTGGAGCAGGCCATGTCAATCGTTCCACCTGGGAGGCCCCTTCCCCCACTATACATGTTGGTGTGTAACAGTGTGGAATAATCCACCATCAACACCCTCTGTCTCAGCAGGCTTTACATGAATCTTTTTGTGCACTCACGCCTCCTATTTACGTGAGTCAGAGCTTCAGTCCTTCAGCTTCATTGTGGTTTCTGATATTTATCTAGGGCTGTTATTCAAGCCAGCTGCCCATCTTGAGATTTCAGAATCTCCTATGACCACAGCTTGTGTTGGCCATAGGAATCAATGGAAAGAGATGTCCGTTTACATAAAAGCTACATGCAAAAAACAACTCCTCGTTTTAATATTTGTAGTCCTTGTGTCACTGTCTTCTGCTAATCCCATTGTTTCTAGAAGTctcttttaagttttaattttttaaaagatttgatAGATGAATACTCAGGCTAACCTAGTGGGTATGATCTTGGAACTTCCATGATTACCCACTTAAAGATCGAAGTATTATATGCTGTGTGATTTTTAGTCAGTGCTGTGAAGTCAAAAATACTTTCTACGTTGGCATTCATTCTTATTTTACTGGGTACCTATGAATGTATGCTGTTTGCTAGAAATAGACTAAAAGATACCTTGTTCTTATAACGTGTTGGTGTATTTGCGTGTTTGCTGAAAATCCTTTCTGTATAAACCAGTTTGCTAGGTCTCTGGGTTAGGCAGGGACTCTGCAGTTTTCTCCTGCCCTAAGTCTCTGCTACTGGGATGGTGTTCCACTGGTCCAGGTGAGCATGAGTCGGAGGTAATAAACAGCTTTACTGGGCATTTGTCTGCTTTGGTTTACTGCAATATGTGGTAAACTACTTATCAGGAAACACGTATATAATctctagaaagaagaaaaaccatagtAGTTCATTTCCCAGTGGGTACCTTTGagatttttaatagtaaaaataagaatctgtactg
>XM_004093174.3
GAGTTGCGGTAGCCATGGTGACGGGAGGCGGGGCGCCGCGCCCCTCTGGCAGTCACCGAGGCCTGGACCTGCGGCGTCGGTGGCGCGCGCAGAGGGCCAGGCCGGGCTTAGAGGCCGGGCCGACGCGTGGCGGCAGCGGGTACCCAAGGCCGGGCCTGGCGCGCAGGCGCTGACCCGACCTGGCAGTGAGCGGGCCGCGGCCTTGGCTGAGAGGCCTTAACCCCGCCGGCTGCCGCGCCCTGCATGCGAGTTGGGCCGCGGGCGGGGTTGGAGCCTACTCGGAGCGACGGCGATGGACGCCTTAGAAGAAGAGAGCTTTGCGCTGTCTTTCTCCTCCGCCTCTGATGCAGAATTTGATGCTGTGGTTGGATATTTAGAGGACATTATCATGGATGACGAGTTCCAGTTATTACAGAGAAATTTCATGGACAAGTACTACCTGGAGTTTGAAGACACAGAAGAGAATAAACTCACCTACACACCTATTTTTAATGAATACATTTGTTTggtagaaaaatatattgaagaaCAGCTGCTGCAGCGGATTCCTGGGTTCAACATGGCAGCTTTCACCACAACATTACAGCACCATAAGGATGAAGTGGCTGGTGACATATTCGACATGCTGCTCACCTTCACAGATTTTCtggcttttaaagaaatgtttttggaCTACAGAGCAGAAAAAGAAGGCCGAGGACTGGACTTAAGCAGTGGCTTAGTGGTGACTTCGTTGTGCAAATAATCTTCTCTGCCAGCTTCCCAGAACAATCTGCGGCACTAGGTCCTACCTCCAGCCAATGAATGGGATCATTCTGGATGTCACCAGCCCAATAGACTCAGCTCATGAGGACAGAACACATCTTGGAAAGACTGACTCTGTTATGTAACTCTTCATTTATGTTAAGTATTGATAGGTCAAAACCAAAATGACCTAACCCTCCTGGACCTATTTATCCTGAAACACCTTCTTGTATTCATTAACCATAGTACTCCTCCCCACCTCAAGTAGACATCTCTCTCAGGATCTTCTGAGTCAGATGCCTCTGGAGCAAGCCCTATGTCAGGCACTCCACCTGGGGGGCCCTTCCCCAGCATACCTGCTGGTGTGTAAGGGTGGACTAACCCGCCGCCACCACCCTCTGTTCCAGCAGGCTCTGCATGAATCTTTGTGCACTTGCACCTCTTTTTCACATGGGCCACAGTTTCAGTACTTCAGCCTCAGTGGGGTTCCTGATGTTTATCTAGGGTGTTACTCAAGCCGTTTGAGATTTTGGAATCTCCTGTGATCACATCTTGTCTCAGCTGTAGGAATCAACAGAAAGAGACGTTCTCTACATAAAAGCTCCATGTGAAAAGCTACTCCTAGTCTTAACATTTGCAGTCCTTGTGTCACTGTCTTCTGGTCCTGATGTAGTCCCACTGTTTCTAGAAGTCTCTTTTAagcattatttttgaaaaaaaaaatatttttatagatgaataCTCAGGCTAACCTAGTGGATGTGATCTTGGAACTTCCATGATTATCCACTTAAAGATCAAAGTATTATATGCTGTGTGCTTTTTAGGTGTTAGTACTCGTGAAGGCAAAAATGCTTTCTACATTGGCATTCATTCCTATTTTACTGGGCACCTATGAATGTATGCTGTGTGCTAGAAATAGATTAAAACATATTCTTATAGCATGTTAGTGTGTTTGCATGTTTGCTGAAAATCCTTTGTGTATAAACCAGTTTGTAAGGTTCTCTGGTAGGGACTCTGCAGTTTCTTCCTGTCAAAATCTCTCCTACCAAGATGGTGTTCCACTGTCCAGCCCAGCATGAGTAGCAGGTAGGGCACAGCTTTACTGGCTGTTTGTATGCTTTGGTTTAGTGCAATGTGTGGTAGATTACTTATCAGAAAACATATATGTCATCTCTAGAACGAAGAAAAAGCATAGTAGTTCAATTCCCAGTGTgtccctttgattttttttaatagtaaaaagaaTCTGTACTTACTTTTCACTTGGCCATTCTGGTTTTAAAGGACAAGCTATAAGCTCTGTGTTTTTCTGTACTGATGTGTCACTTATTAAATACTTTTGTACCATGAGTAAAATTTGAGGTGTTTTGCGAGAACCACCATTCTCA

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