Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name EEF1A1P39
Plot displaying the genomic locations of a retrocopy (in chr22a) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr22a:65688461-65689387  UCSC
Strand +
Parental Sequence XM_003271122.4
Parental seq. overlap 783 bp
Parental seq. overlap (%) 38.9%
Genomic Region Intergenic
Retrocopy Summary EEF1A1P39, located on chr22a:65688461-65689387, is a retrocopy of the parental gene EEF1A1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name EEF1A1
Full Name N/A
Also known as EEF1A1
Coordinate chr3:56514421-56518196
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens EEF1A1P42
Chimpanzee Pan troglodytes EEF1A1P21
Bonobo Pan paniscus EEF1A1P22
Orangutan Pongo abelii EEF1A1P22
Baboon Papio anubis EEF1A1P23
Golden snub-nosed monkey Rhinopithecus roxellana EEF1A1P18
Gorilla Gorilla gorilla Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>EEF1A1P39
TACCAACTCATCCAACTAACAAGCCCTTCTATCTGCCTCCCCAGGATGTCTACAAAATTGGCGGTATTGATATTGTCCCTGTGGGCTGAGTGGAGACATGTTCTCAAGCCCAGCATGGTGGGCTTTGCTCGAGTCAATGTTACATCTTTGCTCCAGTCAATGTTACAACTGAAGTAAAGTCTGCTAAAATGCAACATGAATCTTTTGAGTGAAGCTCTTTTTGGGGACAATATGGGCTTTAATGTCAAGAATGTGCCTGTCAAAGATATTTGTTGTGACAATGTTGCTGGTGGCAGCAAAAATGACCCGCAAATGGAAGCAGCTGAATTCACTGCTCAGGTGATTATCCTGAACCAGCCAGACCAAATCACTGGTGGCTATGTCCCTGTACTGGATTGCCACACAGCTCACATTGTTTGCAAGTCTGCTGAGCTGAAGGAAAAGATTGAATACTATTCTGGTAATAAGCTGGAAGATGGCCCTAAATTCTTGAAATCTGATGGTGCTGCCATTGTTGATATGGTTCCTGACAAGCCCATGTGTGTTGACAGCCTCTCCGACTATTCTCTTCTGGGTCGTTTTGCTGTTCATGATATGAGATAGACAGTTACTACTGGTGTCATCAAAGCAGTGGACAAGAAAGCTTCTGAAGCTGGCAAAGTCACCAAGTCTACCCGGAAGCCTCAGAAGGCTAAATGAATATTATCCCTAATACCTACCACGCCAATCTTAATCAGTGGTAAAAGAATGATCTCAGAACTTTTTGTTTCAATTGGTCATTTTAGTTTAACAGTAAAAGATTGGTTAATGATAACAATGCAGCATAAAACCTTCAGAAGCAAAGGAGAATGTTTTGtggacccatttttttttttttttaaatgtgtggtaGTTTTaagttattagtttttaaaatcagtgct
>XM_003271122.4
CCCGCTCTCGTCATCACCGAGGTGGAGAAGAGCATGCGTGAGGCTCCGGTGCCGGTCAGTGGGCAGAGCGCACATCGCCCACAGTCCCCGAGACGTTGGGGGGAGGGGTCGGCAATTGAACCGGTGCCTAGAGAAGGTGGCGCGGGGTAAACTGGGAAAGTGATGTCGTGTACTGGCTCCGCCTTTTTCCCGAGGGTGGGGGAGAACCGTATATAAGTGCAGTAGTCGCCCTGAACGTTCTTTTTCGCAACGGGTTTGCCGCCAGAACACAGgTGTCGTGAAAACTACCCCTAAAAGccaaaatgggaaaggaaaagacTCATATCAACATTGTCGTCATTGGACATGTAGATTCGGGCAAGTCCACCACTACTGGCCATCTGATCTATAAATGCGGTGGCATCGACAAAAGAACCATTGAAAAATTTGAGAAGGAGGCTGCTGAGATGGGAAAGGGCTCCTTCAAGTATGCCTGGGTCTTGGATAAACTGAAAGCTGAGCGTGAACGTGGTATCACCATTGATATCTCCTTGtggaaatttgagaccagcaagTACTATGTGACTATCATTGATGCCCCAGGACACAGAGACTTCATCAAAAACATGATTACAGGGACATCCCAGGCTGACTGTGCTGTCCTGATTGTTGCTGCTGGTGTTGGTGAATTTGAAGCTGGTATCTCCAAGAATGGGCAGACCCGAGAGCATGCCCTTCTGGCTTACACACTGGGTGTGAAACAACTAATTGTTGGTGTTAACAAAATGGATTCCACTGAGCCACCTTACAGCCAGAAGAGATATGAGGAAATTGTTAAGGAAGTCAGCACTTACATTAAGAAAATTGGCTACAACCCCGACACAGTAGCATTTGTGCCAATTTCTGGTTGGAATGGTGACAACATGCTGGAGCCAAGTGCTAACATGCCTTGGTTCAAGGGGTGGAAAGTCACCCGTAAGGATGGCAATGCCAGTGGAACCACGCTGCTTGAGGCTCTGGACTGCATCCTACCACCAACTCGTCCAACTGACAAGCCCTTGCGCCTGCCTCTCCAGGATGTCTACAAAATTGGTGGTATTGGTACCGTTCCTGTTGGCCGAGTGGAGACTGGTGTTCTCAAACCTGGTATGgtggtcacctttgctccagtcaaCGTTACAACAGAAGTAAAATCTGTCGAAATGCACCATGAAGCTTTGAGTGAAGCTCTTCCTGGGGACAATGTGGGCTTCAATGTCAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTTGCTGGTGACAGCAAAAATGACCCACCGATGGAAGCAGCTGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGGCAAATAAGCGCTGGCTATGCCCCTGTATTGGATTGCCACACGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCAGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAAATGAATATTATCCCTAATACCTGCCACCCCACTCCTAATCAGTGGTGGAAGAACGGTCTCAGAACTATTTGTTTCAATTGGCCATTTAAGTTTAGTAGTAAAAGACTGGTTAATGATAACAATGCATCGTAAAACcttcagaaggaaaggagaatgttTGTGGaccactttggttttcttttttgcgTGTGGCAGTTTTaagttattagtttttaaaatcagtactttttaatggaaacaacTTGACCAAAAATTTGTCACAGAATTTTGAGACCCATTAAAAAAGTTTAATGAGAAA

Publications

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