RCPedia: Rtcs

Summary

Retrocopy Name	ERP44P2	Plot displaying the genomic locations of a retrocopy (in chr20) and its respective parental gene (in chr1a). Each line represents a retrocopy.
Species	Nomascus leucogenys
Coordinates	chr20:41934627-41934812 UCSC
Strand	-
Parental Sequence	XM_003260283.3
Parental seq. overlap	153 bp
Parental seq. overlap (%)	8%
Genomic Region	Intergenic
Retrocopy Summary	ERP44P2, located on chr20:41934627-41934812, is a retrocopy of the parental gene ERP44. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name	ERP44
Full Name	N/A
Also known as	ERP44
Coordinate	chr1a:34449404-34564528
Strand	+
Gene summary	N/A

Homology

Species	Scientific Name	Retrocopy
Human	Homo sapiens	ERP44P1
Chimpanzee	Pan troglodytes	ERP44P1
Bonobo	Pan paniscus	ERP44P1
Gorilla	Gorilla gorilla	ERP44P1
Orangutan	Pongo abelii	ERP44P1
Green monkey	Chlorocebus sabaeus	ERP44P2
Crab-eating macaque	Macaca fascicularis	ERP44P1
Rhesus	Macaca mulatta	ERP44P1
Baboon	Papio anubis	ERP44P1
Golden snub-nosed monkey	Rhinopithecus roxellana	ERP44P1
Marmoset	Callithrix jacchus	Without Homology
Mouse lemur	Microcebus murinus	Without Homology
Mouse	Mus musculus	Without Homology
Rat	Rattus norvegicus	Without Homology
Chinese hamster	Cricetulus griseus	Without Homology
Rabbit	Oryctolagus cuniculus	Without Homology
Pig	Sus scrofa	Without Homology
Cow	Bos taurus	Without Homology
Sheep	Ovis aries	Without Homology
Dolphin	Tursiops truncatus	Without Homology
Horse	Equus caballus	Without Homology
Dog	Canis familiaris	Without Homology
Panda	Ailuropoda melanoleuca	Without Homology
Cat	Felis catus	Without Homology
Pale spear-nosed bat	Phyllostomus discolor	Without Homology
Velvety free-tailed bat	Molossus molossus	Without Homology
Greater mouse-eared bat	Myotis myotis	Without Homology
Kuhl's pipistrelle	Pipistrellus kuhlii	Without Homology
Greater horseshoe bat	Rhinolophus ferrumequinum	Without Homology
Egyptian rousette	Rousettus aegyptiacus	Without Homology
Sloth	Choloepus didactylus	Without Homology
Tasmanian Devil	Sarcophilus harrisii	Without Homology
Opossum	Monodelphis domestica	Without Homology
Platypus	Ornithorhynchus anatinus	Without Homology
Chicken	Gallus gallus	Without Homology
Turkey	Meleagris gallopavo	Without Homology
Zebra Finch	Taeniopygia guttata	Without Homology
Budgerigar	Melopsittacus undulatus	Without Homology
Painted Turtle	Chrysemys picta	Without Homology
Lizard	Anolis Carolinensis	Without Homology
Frog	Xenopus tropicalis	Without Homology
Zebrafish	Danio rerio	Without Homology
Drosophila	Drosophila melanogaster	Without Homology

Expression

Related Sequence

>ERP44P2
AGCTTTAGGCATATATTTGTGTTTAGTAACTTCAGGGATGGATTTAACCTGGAAACTCAAGCAGATTGCATGTAACTTGCATTCTAGAAAATATGCACAGAGCATTCCGTTGTGGGCCTGACCCAACCAATAAAGCCCCAGGACAGGAAGTCCAAGATTTAGCTAGGAGTCCACCTGAGAGCTCCC

>XM_003260283.3
CGGAAGTGAGGGTGTGAGAGGCCTCTCTGGAAGTTGTCCCGGGTGTTCGCCGCTGGAGCCCTGGTCGAGAGGACGAGGTGCAGCTGCCTGGAGAATCCTCCGCTGCCGCCGGCTCCCGGAGCCCAGCCCTTTCCTAACCCAACCCAACCAAGCCCAGTCCCAGCCGCCAGCGCCTGTCCCTGCCGCGGACCCCAGCGTTACCATGCATCCTGCCGTCTTCCTATCCTTACCCGACCTCAGATGCTCCCTTCTGCTCCTGgtaACTTGGGTTTTTACTCCTGTAACAACTGAAATAACAAGTCTTGATACAGAGAATATAGATGAAATTTTAAaCAATGCTGATGTTGCTTTAGTAAATTTTTATGCTGACTGGTGTCGTTTCAGTCAGATGTTGCATCCAATTTTTGAGGAAGCTTCCGATGTCATTAAGGAAGAATTTCCAAATGAAAATCAAGTAGTGTTTGCCAGAGTTGATTGTGATCAGCACTctGACATAGCCCAGAGATACAGGATAAGCAAATACCCAACCCTCAAATTGTTTCGTAATGGGATGATGATGAAGAGAGAATACAGGGGTCAGCGATCAGTGAAAGCACTGGCAGATTACATCAGGCAACAAAAAAGTGACCCCATTCAAGAAATTCGGGACTTAGCAGAAATCACCACTCTTGATCGCAGCAAAAGAAATATCATTGGATATTTTGAGCAAAAGGACTCGGACAACTATAGAGTTTTTGAACGAGTAGCGAATATTTTGCATGATGACTGTGCCTTTCTTTCTGCATTTGGGGATGTTTCAAAACCGGAAAGATATAGTGGAGACAACATAATCTACAAACCACCAGGGCAGTCTGCTCCGGATATGGTGTATTTGGGAGCTATGACAAATTTTGATGTGACTTACAACTGGATTCAAGATAAATGTGTTCCTCTTGTCCgagaaataacatttgaaaatggAGAGGAATTGACAGAAGAAGGACTGCCTTTTCTCATACTCTTTCACATGAAAGAAGATACAGAAAGTTTAGAAATATTCCAGAATGAAGTAGCTCGGCAATTAATAAGTGAAAAAGgtACAATAAACTTTTTACATGCCGATTGTGACAAATTTAGACATCCTCTTCTGCACATACAGAAAACTCCAGCAGATTGTCCTGTAATCGCTATTGACAGCTTTAGGCATATGTATGTGTTTGGAGACTTCAAAGATGTATTAATTCCTGGAAAACTCAAGCAATTCGTATTTGACTTACATTCTGGAAAACTGCACAGAGAATTCCATCATGGACCTGATCCAACTGATACAGCCCCAGGAGAGcAAGCCCAAGATGTAGCAAGCAGTCCACCTGAGAGCTCCTTCCAGAAACTAGCACCCAGTGAATATAGGTATACTCTATTGAGGGATCGAGATGAgctttaaaaacttgaaaaacagtTTGTAAGCCTTTCAACAGCAGCATCAACCTACGTGGTGGAAATAGTAAACCtatattttcataattctatgtgtatttttattttgaataaactgaaagaaattttgggtttttaatttttttctccctgactCAAAATGCATTGTCATTTAATATAgttgcctcttaaaaaaaaaaaaaaaaaaaaaacctgctaggatttaaaaataaaaatcagaggcCTATCTCCACTTTAAATCTGTCCtgtaaaagttttataaatcaaGTGAAAGGTGACATTGCCAGAAACTTACCATTAACTTGCACTATTAGGGTAAGGAGGACTTAGGGATGTTTCCTGTGTCGtatgtgcttttctttctttcatatgaTCAATTCTGTTGGTATTTTCAGTATCTCATTTCTCAAAGTTAAAGAGATATACATTCTGGATACTTGGGAGgggaataaattaaaattttcacaCTG

>XM_003260283.3 

CGGAAGTGAGGGTGTGAGAGGCCTCTCTGGAAGTTGTCCCGGGTGTTCGCCGCTGGAGCCCTGGTCGAGAGGACGAGGTGCAGCTGCCTGGAGAATCCTCCGCTGCCGCCGGCTCCCGGAGCCCAGCCCTTTCCTAACCCAACCCAACCAAGCCCAGTCCCAGCCGCCAGCGCCTGTCCCTGCCGCGGACCCCAGCGTTACCATGCATCCTGCCGTCTTCCTATCCTTACCCGACCTCAGATGCTCCCTTCTGCTCCTGgtaACTTGGGTTTTTACTCCTGTAACAACTGAAATAACAAGTCTTGATACAGAGAATATAGATGAAATTTTAAaCAATGCTGATGTTGCTTTAGTAAATTTTTATGCTGACTGGTGTCGTTTCAGTCAGATGTTGCATCCAATTTTTGAGGAAGCTTCCGATGTCATTAAGGAAGAATTTCCAAATGAAAATCAAGTAGTGTTTGCCAGAGTTGATTGTGATCAGCACTctGACATAGCCCAGAGATACAGGATAAGCAAATACCCAACCCTCAAATTGTTTCGTAATGGGATGATGATGAAGAGAGAATACAGGGGTCAGCGATCAGTGAAAGCACTGGCAGATTACATCAGGCAACAAAAAAGTGACCCCATTCAAGAAATTCGGGACTTAGCAGAAATCACCACTCTTGATCGCAGCAAAAGAAATATCATTGGATATTTTGAGCAAAAGGACTCGGACAACTATAGAGTTTTTGAACGAGTAGCGAATATTTTGCATGATGACTGTGCCTTTCTTTCTGCATTTGGGGATGTTTCAAAACCGGAAAGATATAGTGGAGACAACATAATCTACAAACCACCAGGGCAGTCTGCTCCGGATATGGTGTATTTGGGAGCTATGACAAATTTTGATGTGACTTACAACTGGATTCAAGATAAATGTGTTCCTCTTGTCCgagaaataacatttgaaaatggAGAGGAATTGACAGAAGAAGGACTGCCTTTTCTCATACTCTTTCACATGAAAGAAGATACAGAAAGTTTAGAAATATTCCAGAATGAAGTAGCTCGGCAATTAATAAGTGAAAAAGgtACAATAAACTTTTTACATGCCGATTGTGACAAATTTAGACATCCTCTTCTGCACATACAGAAAACTCCAGCAGATTGTCCTGTAATCGCTATTGACAGCTTTAGGCATATGTATGTGTTTGGAGACTTCAAAGATGTATTAATTCCTGGAAAACTCAAGCAATTCGTATTTGACTTACATTCTGGAAAACTGCACAGAGAATTCCATCATGGACCTGATCCAACTGATACAGCCCCAGGAGAGcAAGCCCAAGATGTAGCAAGCAGTCCACCTGAGAGCTCCTTCCAGAAACTAGCACCCAGTGAATATAGGTATACTCTATTGAGGGATCGAGATGAgctttaaaaacttgaaaaacagtTTGTAAGCCTTTCAACAGCAGCATCAACCTACGTGGTGGAAATAGTAAACCtatattttcataattctatgtgtatttttattttgaataaactgaaagaaattttgggtttttaatttttttctccctgactCAAAATGCATTGTCATTTAATATAgttgcctcttaaaaaaaaaaaaaaaaaaaaaacctgctaggatttaaaaataaaaatcagaggcCTATCTCCACTTTAAATCTGTCCtgtaaaagttttataaatcaaGTGAAAGGTGACATTGCCAGAAACTTACCATTAACTTGCACTATTAGGGTAAGGAGGACTTAGGGATGTTTCCTGTGTCGtatgtgcttttctttctttcatatgaTCAATTCTGTTGGTATTTTCAGTATCTCATTTCTCAAAGTTAAAGAGATATACATTCTGGATACTTGGGAGgggaataaattaaaattttcacaCTG

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