Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name FAM133BP3
Plot displaying the genomic locations of a retrocopy (in chr19) and its respective parental gene (in chr11). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr19:58736473-58738416  UCSC
Strand +
Parental Sequence XM_003252454.3
Parental seq. overlap 1705 bp
Parental seq. overlap (%) 73.1%
Genomic Region Intragenic (BABAM2)
Retrocopy Summary FAM133BP3, located on chr19:58736473-58738416, is a retrocopy of the parental gene FAM133B. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name FAM133B
Full Name N/A
Also known as FAM133B
Coordinate chr11:23050955-23082224
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens FAM133EP
Chimpanzee Pan troglodytes FAM133BP2
Bonobo Pan paniscus FAM133BP2
Gorilla Gorilla gorilla FAM133BP2
Orangutan Pongo abelii FAM133BP2
Green monkey Chlorocebus sabaeus FAM133BP2
Crab-eating macaque Macaca fascicularis FAM133BP6
Rhesus Macaca mulatta FAM133BP7
Baboon Papio anubis FAM133BP4
Golden snub-nosed monkey Rhinopithecus roxellana FAM133BP5
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>FAM133BP3
CACCTGCGGCGGGCCCGCTTTGGCCATCTCTCCGGCCCGGTTTCCCTCGGCGTGCGACTGTGTGCTCAGCCCAGCACCATGGGGAAGTGGGACAAATGGGTGGCCTATATGAACCCAACAGCAATGGCGAGATCAAGGGGTCCAATCCAGTCTTCAGGGCCAAAAATACACGATTATCTGAATCGATCAAGGCATACCTGGGggctccAAGGCTTTGGCTGaatgtgaagaaaaaatgaatgagaaccggaagaaagaactagaaaaacacaGGGGGAAATTGTTAAGTGGAAGTGAGAGCTCAtccatctggtAAGCATTCATCTTCTTCTTCATCAAGCTCTGATTCTTCCAGCGGTTCTTCTGACTCTGAAGATAAGGATAAGAAACACggaaaactgagaaagaaaaagaagaaccgTTCACATAAATCTTCTGAAAGGCCCATGTCAGAAACTGAATGAGACAGTaaggataatttaaaaaagaaaaaggagtcaaAAGATGcaactgagaaagaaaaggacattaaaggactcagaaaaaaagagaaagatatattCTGAAGATAAACCTTTATCATCTGAGTCCTTGTCAGAATCAGAGTATATTAAGGAGGTACGAgcaaaaaagatgaaaagcagTGAgcctgCTAGTTCAAGTCCTGACTCACCATAACATTAAGAAAAATCAGGATTCCCTTATAGAGAAAGCACAATGTCTGAGGAAATTTCAGCTGTGAAAACTACAACATATTTACTAAAATGcatgaattttcttgtttttagaatTATTCCTGGACTATTCAGTAGCCACTCAAATGCCACTGTGTGAAAGGGCCATAAATACTGCCTGCTGCTTGAAcatctattttcttctcttccagtGCTTGATAACTCTGGGAGATAATACACTGCAGTCGTACTAGTGGTTAAGATATTTGGgaataaaattaatacttttgacTAGAAGTGTCTAAAGATAAACCAACAGAAATTGAATCTGGATACATCTTTAAGATGTGATCAGAAATGACCAGATGACTCTAGTTAAAATTTTTGAAGGAGGgattaaattaatatttcaaaaccCTTACTCTGTAGATAAATGTATGTTAATTTTTTCCCCTTGTATACTTTTATTTACCTGGGGAAGGAGCTTTTAGGGTTAGGGGGTGGTTTGCTATCTCTTTAGCTAGCGGAATAGTGTGCCTTTGATCCTCACACATCTGTATCATGAACACAGCAGCCATGCTTCACAGGAAGGTCAGAGCTGGCTGCCAGCAGTCTTGCCCTTTACTGACCTTATGTCATCCTTGGATGCTGTCATATGCTGCTTTGAGTGAACCAGAGAAACAGCCATTTGCAGCATGAGAAAGCCCCAAAAGCTTTGGGATTTACCTCCACTTcaataataatgaatattttttagcATTAGAATGTGTTATgtcatttgaattaattttgattATACTTCGGCTTGGGAAAGGAATTACTTTAAATAGACACTGGTACTTTCTGAACTTGATAGCTAAGGATTCTAAAACGCACATTTTATACTAAGTTTTAACCAGTCAGGAAAATTTTATGTAACCAGtgatagtttattttttgtatgaaTTTTGTTTAGGCTGCAATGTTTAGCTTTTGTTAACTCCTCACTCTTGCTGTTTTAAGTTCATTACTATGTTTAACAACCTACTTGCCAAGATATTTAGCATGTAAAATGCagggtttttatttaaaaaaaaaaaaacagcttcatATTGAAGCTGAGACTTACCATAAACAAGTtgagtggca
>XM_003252454.3
GTGGGGAGGCGGAAAGAGGACCTGCGGCGGGCCCTCTTCCGCCATTTCTCCGGCCCGGTTTCCCTCGGCGTGCCACTGTGCGCTCAGTCCAGCACCATGGGGAAGCGGGACAATCGGGTGGCCTATATGAACCCAATAGCAATGGCGAGATCAAGGGGTCCAATCCAGTCTTCAGGGCCAACAATACAGGATTATCTGAATCGACCAAGGCCTACCTGgGAAGAAGTAAAAGagcaactagaaaagaaaaagaaaggctccAAGGCTTTGGctgaatttgaagaaaaaatgaatgagAACTGGAAGAAAGAACTGGAAAAACACAGGGAGAAATTGTTAAGTGGAAGTGAGAGCTCATCCAAAAAAAGACAGagaaagaaaaaagaaaagaagaaatctggTAGGTATTCATCTTCTTCTTCATCAAGCTCTGATTCTTCCAGCAGTTCTTCTGATTCTGAAGATGAGgataagaaacaaggaaaacggagaaagaaaaagaagaaccgTTCACATAAATCTTCTGAAAGCTCCATGTCAGAAACTGAATCAGACAGTAaggatagcttaaaaaagaaaaagaagtcaaaagatggaactgagaaagaaaaggatATTAAAGGACTcagcaaaaagagaaagatgtaTTCTGAAGATAAACCTTTATCATCTGAGTCCTTGTCAGAATCAGAGTATATTGAGGAGGTAcgagcaaaaaagaagaaaagcagtgAAGAACGAGAAAAAGCAACAgaaaaaacaaaaaagaaaaagaagcataaGAAACAcagtaagaagaagaaaaagaaggctgCTAGTTCAAGTCCTGACTCACCATAACATTAAGAAAAATCAGGATTCCCTTATAAAGAAAGTGCAATGTCTGAGGAAATTTCAACTGTGAAAACTACAACATATTTACTAAAATGcatgaattttcttgtttttagaatTATTCCTGGACTATTCAGTAGCCACTCAGATGCCACTGTGTGAAAGGGCCATAAATGTTGCCTGCCGCTtgaacatctatttttttctcttccagtgCTTGATAACTCTGGGAGATAATACACTGCAGTTGTACTAGTGGTTAAGATATTTGGgaataaaattaatacttttcaCTAGAAGTGTCTAAGGATAACCAACAGAAATTGAATCTGGATACATCTTTAAGATGTAATCAGAAATGACCAGATGACTCTAGTTAAAATTTTTGAAGGAAGGATTACATTAATATTTCAAAACCCTTACTCTGTAGAtaagtgtattttaattttttcccctcgTATACTTTTATTTACCTGGGGAAGGAGCTTTTAGGGTTGGGGGGGGGTTGATTTGCTATCTCTTTAGCTAGCAGAATAGTGTGCCTTTGATCCTCACACATCCTGTATTATGGACACAGTAGCCATGCTTCACGGGGAGGTCAGAGCTGGCTACCAGCAGTCTTGCCCTTTACTGAGCTTAGTGTTATCCTTGAATGCTGTCATATGCTGCTTTGAGTGAACCAGAGAAACAGTCATTTGCAGCATGAGAAAGCCCCAAAAGCTCTGGGATTTACCTCCACTTCagtaataatgaatattttttagcATTAGAATGTGTTATgtcatttgaattaattttgactACACTTTGGCTTGGGagaggaattattttaaatagacacTGGTACTTTTTGAACTTGATAGCTAAAGATTCTAAAATGCATGTTTTATACTAAGTTTAACCAGTCAGGAAAATTTTATGTAACCagtgatagtttatttttttgtatgaatTTTGTTTAGGCTGCAATGTTTAGCTTTTGTTAACTCCTCACTCTTGCTGTCTTAAGTTCATTACTAGGTTTAATGGCCTACTTGCCAAGATATTTAGCATGTAAAAAGCAGggttttgattaaaaaaaaaaaaacggcttCATATTGAAGCTGAGACTTACAATAACAAGTTGAGTGGCAAGCCTGGTATGCTGTGTCTTATTGCCAGAATCTTAGtaaatgtaatgttttaaaagtttgttgTCTTTGTATATTAATAACAAATTATGACAAGTTAAGTTTAAATAAGAGTTACATTATTGCTCTCCCTGTGTCATATTTTACTAAGATTTTGTGCCTCATGTCTACTGCTGAATTGTTTACTAGGAATGTTAAAAGGAATtgataattcattttcattttacatttttatataatcagGTAACATGACATACAACTTGATGTACAATTTTGCCTGTTACAAAGGGTGTGCTAATTATAGTGGTATATGCACGGAACATGTTGGCATGACAACAGGCTGAATAAATAgctattttacttaa

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