Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name FKBP1AP3
Plot displaying the genomic locations of a retrocopy (in chr6) and its respective parental gene (in chr13). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr6:92519125-92520482  UCSC
Strand -
Parental Sequence XM_012511897.2
Parental seq. overlap 1174 bp
Parental seq. overlap (%) 70.8%
Genomic Region Intragenic (NEO1)
Retrocopy Summary FKBP1AP3, located on chr6:92519125-92520482, is a retrocopy of the parental gene FKBP1A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name FKBP1A
Full Name N/A
Also known as FKBP1A
Coordinate chr13:34040855-34064965
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens FKBP1AP2
Chimpanzee Pan troglodytes FKBP1AP4
Bonobo Pan paniscus FKBP1AP5
Gorilla Gorilla gorilla FKBP1AP4
Orangutan Pongo abelii FKBP1AP4
Green monkey Chlorocebus sabaeus FKBP1AP4
Crab-eating macaque Macaca fascicularis FKBP1AP4
Rhesus Macaca mulatta FKBP1AP5
Baboon Papio anubis FKBP1AP4
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>FKBP1AP3
CCGGGATGCTTTAAGATGGAAAGAAATTTGATTCCTCCCGGGACAGAAATGAGCCCTTTAAGTTTGTGCTAGGCAAGCAGGAGGTGACCCGGGAGTGGGAGGTAGGTGTTGCCCAGATGAATGTGGGTCACAGAGCCAAACTGAGTATATCTCTAGACTATGCCTTCAGTGCCACTGGGCACCAGGGCATCATCCCACCACATGCCACTCTTGTCTTCAACATGGAGGTTCTAAGACTGGGATGGCAAGAATGGCCTTCTCCCTTGGCTTCCTGTTCTTACATCTGCCACGGAGGGATCTGGTGCCTccagacacatgcacatgaatcCATATGGAGCTTTTCCATATGTAGATCCACTACAACCTGTAAAACATCTACCCTGACGGAATGCGTTCTGTTACTCAGCTTTGCTTCTGGCacctccatttcctctttccctttcttctcaaTTTTCCTAAACTATATGCCATAAGCCTGAAGTTActcagtttatttcattttcactttggGGTGATGATTCAGTTTCAGTCTTTTCGATCTAGTTTCCAAGTAAGTCTATGGTCAAGTATTAACAGAACAAGCGACGGGTTAACTTTAGAACACAATTTAGTGTTGGGGGGGTTATaagaatctttattttaaatttttttggatgAAATTTTAATCTATTATATACTAAACATTCTTGCTGCTGTGCTGCAAAGCCATAGCAAATCTGAGGCACTCTTGAGGGCTGAATTATTCTCAAAGTTGAAAGATGTCTTGGGTTAAATTAAAAGCACTACCAAAAActgaggtggggatggggagccTTTGCCTCCACCAGTCCCACTCTACCCTCCCCTGAAATCCTCTGCCTTTTGAAAGCAGACCATTTTTGCTGCAATGCTGGATGCTACAGGAATCTGTCCCTGGGCCAGCGGGGACCTCTGGAAGCCTTCTTGGTGGCCTGGCTTATTTCCTCCGCCCCATCCTGTGGCTTTTCTAACGGACTTTCAGAAATTTTGTAATCTCATAACTTTCCAAGCTCCACCACTTCCTTAATTTTAAGAACTTTAATTGAAAGTATAAATTAAAGGTGTTGTTTGTAGACTTAACCACCCAATGAAAGCCCAAGCTATCATGACAAATCCTTGAATGTTAAGCAAATGATGCTGGTCATCGCAGCTTCAACATCTCCTGTTTTCTGCCACTTGACTCTCTCTGCTGATCTCAACGTTTCCTGGCTTTTCCTCCTTCAGCCCCTTGTCACTCCTTTGATGTCCTGTGTAGTGAACTGGTGACAGAAATTGTTGCCCCTCTCCCCACAACATCACATGAGTTTCCAattttattattacaataaaaGTGCTTTATA
>XM_012511897.2
GGACGTGCGCGCCGTGTGGGGCGCGCACGCAGGGCTGGGCGAGAGGGGGCGTGCGCGTGCGCAGGCGACGCGCCGAGGGACTAGGCAGAGCTGTGGAACCGCCGCCAGGTCGCTGTCGGTCCACGCCGCCCGTCGCGCTGCCCGCCCGCTCAGCGTCCGCCGCCGCCATGGGAGTGCAGGTGGAAACCATCTCCCCAGGAGACGGGCGCACCTTCCCGAAGCGCGGCCAGACCTGCGTGGTGCACTATACCGGGATGCTTGAAGATGGAAAGAAATTTGATTCCTCCCGGGACAGAAACAAGCCCTTTAAGTTTATGCTAGGCAAGCAGGAGGTGATCCGAGGCTGGGAAGAAGGGGTTGCCCAGATGAGTGTGGGTCAGAGAGCCAAACTGACTATATCTCCAGATTATGCCTATGGTGCCACTGGGCACCCAGGCATCATCCCACCACATGCCACTCTCGTCTTCGATGTGGAGCTTCTAAAACTGGAATGACAGGAATGGCCTCCTCCCTTAGCTCCCTGTTCTTGGATCTGCCATGGAGGGATCTGGTGCCTCCAGACGTGTGCACATGAATCCATATGGAGCTTTTCCTGATGTTCCACTCCACTTTGTATAGACATCTGCCCTGACTGAATGTGTTGTCACTCAGCTTTGCTTCCAACACCTCtgtttcctcttcccctttctcctcgTATGTGTGTTTACCTAAACTACATGCCATAAACCTCaagttattcatttaattttgttttcattttggggtGAAGATTCAGTTTCAGTCTTTTGGGTATAGGTTTCCAATTAAGTACATGGTCAAGTATTAACAGCACAAGTTATAGGTTAACGTTAGAATAGGAATTGGTGTTGGGGGGGGTtgcaagaatattttattttaattttttggatgaaatttttatctattatatattaaacaTTCTTGCTGCTGCGCTGCAAAGCCATAGCAGATTTGAGGCGCTGTTGAGGACTGAATTATTCTCCAAGTTGAGAGATGTCCTTGGGTTAAATTAAAATCCCTACCTGAAACTGAGGTGAGGATGGGGGGAGAGCCTTTGCCTCCACCATTCCCACCCACCCTCCCCTTAAACCCTCTGCCTTTGAAAGCAGATCATGTTCACTGCAATGTTGGACACTACAGGTATCTGTCCCTGGGCCAGCAGGGACCTCTGAAGCCTTCTTTGTGGCctgacttattattattttttttcatccTGTGGTTTTTCTAATGGACTTTCAGGAATTTTGTAATCTCCTAACTTTCCAAGCTCCACCACTTCCTAAATCTTAAGAACTTTAATTGACAGTTTCAATTGAAGGTGCTGTTTGTAGACTTAACACCCAGTGAAAGCCCAGCCATCATGACAAATCCTTGAATGTTCTCTTAAGAAAATGATGCTGGTCATCGCAGCTTCAGCATCTCCTGTTATTTGATGCTTGGCTCCCTCTGCTGATCTCAGAGTTTCCTGGCTCTTCCTCCCTTAGCCCCTTCTCACCCCTTTGCTGTCCTGTGTAGTGATCTGGTGAGAGAAATCGTTGCTGCACCCTtcccccagcaccatttatgagtCTCAAGTTTTATTATTGCAATAAAAGTGCTTTATGCCGGCTTTTCTCA

Publications

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