Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name FXYD6P2
Plot displaying the genomic locations of a retrocopy (in chr18) and its respective parental gene (in chr15). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr18:44577469-44578043  UCSC
Strand +
Parental Sequence XM_003253205.3
Parental seq. overlap 474 bp
Parental seq. overlap (%) 21.4%
Genomic Region Intergenic
Retrocopy Summary FXYD6P2, located on chr18:44577469-44578043, is a retrocopy of the parental gene FXYD6. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name FXYD6
Full Name N/A
Also known as FXYD6
Coordinate chr15:16908813-16948810
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens FXYD6P2
Chimpanzee Pan troglodytes FXYD6P1
Bonobo Pan paniscus FXYD6P1
Gorilla Gorilla gorilla FXYD6P2
Orangutan Pongo abelii FXYD6P1
Green monkey Chlorocebus sabaeus FXYD6P2
Crab-eating macaque Macaca fascicularis FXYD6P2
Rhesus Macaca mulatta FXYD6P1
Baboon Papio anubis LOC101011037P1
Golden snub-nosed monkey Rhinopithecus roxellana FXYD6P2
Marmoset Callithrix jacchus FXYD6P1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>FXYD6P2
AAGGGGACTGGCTGTGCAGGCACCATGGAGGTGGGGCTGATCTTTCTATGCAGCCTGTTGGCCCTCATTGTCCTGGCCAGTGCAgctgagaaggaaaaggaaattgacCCTTTTCATTATGACTACCAGATCCTGAGGATTAGGGGGTTGGTATGTGCTGTGTTCCTCTTCTCCACTGGGATCCTCCTTATCCTAGGTTGCAGATGCAAGTGCAGTTTCAATCAGAAGCCCGGGACCCCCAGGAGAGGAGGAAGCCCAGGTGGAGAACCTCATCACTGCAAATGCAACAAAGCTCCAGAAAGCAGAGAGCTGAATGAAGTGCAGCCTTCCAGTGGGAAGCCTCTGGAACCTGAAGGCAGCTGCTTGAACTTTTAGATGCAAATGTTGGTGCTTAAGAAAACAGCCACTTCAGCAACAAATCTTTCCCCAAGAGAAGCCAATAACTTGTGTGTCCTCCCATGCCCTTCCCTGTCCCTTCTAACACCATTCCTCCACCTGATAATCCAACTAATCTCTTGACTCACCACTGCAGCCTGCAGGCTCCTCCAACTCCT
>XM_003253205.3
CAAGGCTACCAATTAACGTGGGCTGCTGTGTCTGGTGCTGggttattttctcctatttttccgTTCCTCGGGGTTTACTATTGTAGAGAGACACCAGGTCTGTCACTGTGTCTGTCTTGCTCCCTTCCCACCCTAACCAGAGGGAAACCGAAAAGCAACAGCTGATGGCAAATCCGCTCCGGCGCTTGCACGCCCCCTCGGCCGCAGTCTCCTGTTGCTTCTCGACGCTTGACCGCCCTTTGGAAAAATCTCTCCGCCCCTCGAGAGGAGAGAGGAGCAGAGGACGCGCGCGAGCACGGAGCGGGAGGAcgggcagggagaggaggagagggggtcTGCGCGCGGCCGCTACCCGGAAGCCAGCGGACGGCAGCACGGAGTGGGCTGTCCCCGAGCCCAGCCCCGAGCgagcccccgcccccgcccccgcagGACGCGCCTCCCAGCCCGCCCGACTCCTAGGAGGAGGGGAGGCGGGAAAGGAGCTCAAGCCTCACCCAccgccctgcccccagccccgccACTCCCAGGCTCCTCGGGACTCGGCGGGTCCTCCAGGAAGTCTCGGAGGGGACCGGCTGTGCAGacACCATGGAGTTGGTGCTGGTCTTCCTCTGCAGCCTGCTGGCCCCCACGGTCCTGGCCAGTGcagctgagaaggagaaggaaatggaCCCTTTTCATTATGATTACCAGACCCTGAGGATTGGGGGACTGGTGTTCGCTGTGGTCCTCTTCTCGGTTGGGATCCTCCTTATCCTAAgTCGCAGGTGCAAGTGCAGTTTCAATCAGAAGCCCCGGGCTCCAGGAGACGAGGAAGCCCAGGTGGAGAACCTCATCACCGCCAATGCAACAGAGCCCCAGAAAGCAGAGAACTGAAGTGCAGCCATCAGGTGGAAGcctctggaaccTGAAGGCCGCTGCCTGAACCTTTGGTTGCAAATGTCGATGCTTAAGAAAACCGGCCACTTCAGCAACAGCCCTTTCCCCAGGAGAAGCCAAGAACTTGTGTGTCCCCCACCCTATCCCCTCTAACACCATTCCTCCACCTGATGATGCAACTAACATTTGCCTCCCCACTGCAGCCTGCGGTCCTGCCCACCtcctgtgatgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtttgctaaCTGTGGTCTTTGTGGCTACTTGTTCGTGGATGGTATTGTGTTTGTTAGTGAACTGTGGACTCGCTTTCCCAGGCAGGGGCTGAGCCATGTGGCCATCTGCTCCTCCCTGCCCCCGTGGCCCTCCATCACCTTCTGCTCCTAGGAGGCTGCTTGTTGCCCGAGACCAGCCCCCTCCCCTGATTTAGGGATGCATAGGGTAAGAGCACGGGCAGTGGTCTTCAATCGTCTTGAGACCTGGGAAGGTTTGCAGCACTCTGTCATCATTCTTCATGGACTCCTTTCACTCCTTTAACAAAAACGTTGCTTCCTTATCCCACCTGATCGCAGTCTGAAGATCTCTTAGCAATTGGAGATACAAAGCAAGGAGCTGGTGAGCCCAGCGTTGACTTCAGACAGGCTATGCCCTTCCATGGTTAATTTCTTCCTGGGGGCTTCCACGAGGAGTCCCCATCTGCCCCGCCCCTTCATAGAGCGCCCGGGGATTCCAGGCCCAGGGCTTCTACTCTGCCCCTGGGGAATGTGTCCCCTGCATATCTTCTCAGCAATAACCCCGTGGGCTCTGGGACCCTACCCCTTCCAACCTTCCCTGCTTCTGAGACTTCAATCTACAGCCCAGCTCATCCAGACGCAGACTCCAGTCCCTGCAATTGGGTCTCTGGCAGGCAATAGCTGAAGGACCTCTGTTCCGCTGGGGCCAGCACACTGGGATAGATGGAGGGAGAGTAGAGGCCTTTGCTTCTCTGCCCACGTCCCCTTGGATGGGCAGCAGAGACAACTCCCACATCCTTTGCTCTGCCTGTCGTCGGTGGTCAGAGCGGTGAGCAAGGTGGGTTGGAGACTCAGCAGCCTCCGTGCAGCCCTTGGGAACAGTGAGAGGTTGAAGGTCATAACGAGAGTGGGAACTCAACCCAGATCCCGCCCCTCCTGTCCTCTGTGTTCCCGTGGAAACCAACCAAACCATGCGCTGTGACCCATTGCTGTTCTCTGTATCGTGATCTATCCTCTCAACAACgacagaaaaaaggaataaaatatccTTTGTTTCCTAGTG

Publications

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