Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name HIGD1AP10
Plot displaying the genomic locations of a retrocopy (in chr16) and its respective parental gene (in chr4). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr16:30580660-30582570  UCSC
Strand +
Parental Sequence XM_030812028.1
Parental seq. overlap 1144 bp
Parental seq. overlap (%) 82%
Genomic Region Intergenic
Retrocopy Summary HIGD1AP10, located on chr16:30580660-30582570, is a retrocopy of the parental gene HIGD1A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name HIGD1A
Full Name N/A
Also known as HIGD1A
Coordinate chr4:108719140-108736410
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens HIGD1AP18
Chimpanzee Pan troglodytes HIGD1AP11
Bonobo Pan paniscus HIGD1AP11
Gorilla Gorilla gorilla HIGD1AP10
Orangutan Pongo abelii HIGD1AP10
Green monkey Chlorocebus sabaeus HIGD1AP9
Crab-eating macaque Macaca fascicularis HIGD1AP8
Rhesus Macaca mulatta HIGD1AP8
Baboon Papio anubis HIGD1AP8
Golden snub-nosed monkey Rhinopithecus roxellana HIGD1AP8
Marmoset Callithrix jacchus HIGD1AP11
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>HIGD1AP10
CTGGCGTGTGAGGGGTTTGCTAGTTCTAGGGAGATTCTTCAAGCAATCATTATGTCAACAGACACAGATGCTTCCCTTTCTTCATATGATGAAGATCAGGGATCCAAACTTATTAGAAAAGCTAAAGACGCACCATTCATCCCCACTGGAATGGCAGGTTTTGCAGCAATTGTTGCATAGGGATTATACAAATTGAAGAGCAGGGGAAATACTAAAATGTCCCTTCATCTGATCCACATGTGTGTGGCAGCCCAAGGTTTTGTTGTAGGAGCAATGACTCTTGGTATGGGCTATTCCATGTATTAGGAATTCTGGGCAATCCTAAGCCTTAGAAGAAATGAAGCTATCTTAGTCTTGTTGCAGGAGCTTGCTTTAGTTAGGCATCTCATTACTGAAGTTACatattaatgttaaaaataaagtatttgagtGGGTTCAGATGGTAACATGGCATTTTGAATATTGGCTTCCTTTCCTACAGGCTTGATTTGCCTGGTGATTGAATTATTCGTGACTAGTTTACCAACTAGGTCATTCAGGGGAGTCAAGTTAACACAAAAGAAACATGTCACCTAAATGCACTTGATAGCGTTAAAATGTCCACCTTCTTAAACTATTGAGGTGAAATTAGTTCTAAAGAAGACAGCAGGCCAACCCTGAAGTACTCCCAGTTTGCTGCAGAATCTCGCATGTTTTGGATGTTATATAAGAGTCCTATTTGCCCcagttaatttaactttttttctacCTGTCTTGTGGACTGGCTGGCTCTTTTAGAGCTCTGTCTAGAAAGTGCATGTAATAGAACTTGTAAAGCCTCCCACAGCTgaaagtatatatgtgtgtgtgtgtttaaaccaAATCTAGAAAGCTTACAATAGAACTGCATACTAGTAGTATTTATTAAAGAATCGCGgtaattataaacaTGATAATAACTTATGGATTCTAGTTTAGTTATCTTGTAATTGCAGAATTATATTTTTGCTCCTGTTGTAttagaacaattttaaaatatcatcttgaaatagaaatgtgtattttaaccACTCATAGAAAGGCAAATAAACACTTTCTAAATGTGTGCGTTGctgtgtgtgcttttcttattttctccataAGAATTGTAAACATTAAACTAAACCAATTACCTATAATGGAATTGATTAATGTTTTATGAGCAAGCTGGTTTGGTCAGACAGTGTATACACACCTTTATATACAACAGAATGCTATTACACTTGTGAAATTCTCTTGTCTAACCTGAATTTACATTCCATAGTGACAACATGGTGTATGTATTGTTATTAAA
>XM_030812028.1
CTGTGGGTGGGGAGAAACCGGGAGGACTGGGTGCGCGTGCAGGGATCGGAAGCCGGTTGGCGTGTGAGAGGTTTTCTCGCTCTAGGAGATTCTTCAAGCAATCACTATGTCAACAGACACAGGTGTTTCACTTCCTTCATATGAGGAAGATCAGGGATCAAAACTTATTCGAAAAGCTAAAGAGGCACCATTCGTACCCGTTGGAATAGCAGGTTTTGCAGCAATTGTTGCATATGGATTATACAAACTGAAGAGCAGGGGAAATACTAAAATGTCCATCCATCTGATCCACATGCGTGTGGCAGCCCAAGGCTTTGTTGTAGGAGCAATGACTGTTGgtATGGGCTATTCCATGTATCGGGAATTCTGGGCAAAACCTAAGCCTTAGAAGAAGAGATGCTGTCTTGGTCTTGTTGGAGGAGCTTGCTTTAGTTAGACGTCTCATTATTGAAGTTACCTATTATTGTTGGAAATAAACTAATTTGTATGGGTTTAGATGGTAACATGACATTTTGAATATTGGCTTCCTTTCTTGCAGGCTTGATTTGCCTGGTGACCGAATTACTAGTGACTAGTTTACTAACTAGGTCATTCAAGGAAGTCAAGTTAACTTAAACATGTCACCTAAATGCACTTGATGGTGTTGAAATGTCCaccttcttaaatttttaagatgAACTTAGTTCTAAAGAAGATAACAGGCCAATCCTGAAGGTACTCCCAGTTTGCTGCAGAATCTCACATATTTTGGACGTTGCATAAGAGTCCTATTTGCCCCAGTTAATTCAACTTTTGTCTGCCTGTTTTGTGGACTGGCTGGCTCTGTTAGAACTCTGTCCAAAAAGTGCATGGAATATAACTTGTAAAGCTTCCCACAATTGacaatatatatgcatgtgtttaaACCAAATCCAGAAAGCTTAAACAATAGAGCTGCATAATAGTAGTATTTATTAAAGAATCACAATTGTAAACATGAGAATAACTTAAGGATTCTAGTTTAGTTTTTTGTAattgcaaattatatttttgctGCTGATacattagaataatttttaaatgtcatcttgaaatagaaatgtattttaagcACTCATGCAAAGgtaaatgaatactttttaaatgtgtgtgttgcTTATTTTTTCCATAAGAATTGTAAACATTGAACTGAACAAATTACCTATAATGGATTTGATTAATGACTTATGAGCAAGCTGGTTTGGCCAGACAGTATACCCAAACTTTTATATAATATACAGAAGGCTGTCACACTTGTGAAATTCTCTTGTCTAATCTGAATTTGCATTCCATGGTGATAACATGGTATATGTATTGTTATTAAAGTAAATGACCCATGtcaaa

Publications

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