Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name PFN1P4
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr16). Each line represents a retrocopy.
Species Macaca fascicularis
Coordinates chr1:29648094-29648660  UCSC
Strand -
Parental Sequence XM_015437384.1
Parental seq. overlap 508 bp
Parental seq. overlap (%) 36.8%
Genomic Region Intergenic
Retrocopy Summary PFN1P4, located on chr1:29648094-29648660, is a retrocopy of the parental gene PFN1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PFN1
Full Name N/A
Also known as -
Coordinate chr16:5023359-5026772
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens PFN1P1
Chimpanzee Pan troglodytes PFN1P5
Bonobo Pan paniscus PFN1P4
Gorilla Gorilla gorilla PFN1P4
Orangutan Pongo abelii PFN1P7
Gibbon Nomascus leucogenys PFN1P3
Green monkey Chlorocebus sabaeus PFN1P5
Rhesus Macaca mulatta PFN1P3
Baboon Papio anubis PFN1P2
Golden snub-nosed monkey Rhinopithecus roxellana PFN1P1
Marmoset Callithrix jacchus PFN1P10
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PFN1P4
CTGTCAGGACGCGGCCATCATGGGCTACAAGGACTCGCCCTCCATCTGGGCCGCCATCTCCTGGAAAACCTTCGCTAGCATCACGCCAGCTGAGGCTAGTGTCCTAGCTGGCAAAGACCGGTCAAGTGTTTTTGTGAATGGGCTGACGCTTGGGGGCCAGAAATGTTCAGTGATCCGGGACTCACTGCTGCAGGATGGGGAATTTTGCATGGATCTTAGTATACCAAGAGTACCGGTGGAGCCCCCACTTTCAATGTCACTGTCACCAAGACTGACGCTAGTCCTGCTGATGGGCAAAGAAAGTGTCCACGGTGGTTTGATCAACAAGAAATGTTATGAAATGACCTCCCACTTTTGGCGTTCCCAGTACTGCCTTCGTCCCTCTCTTGCCCTTTACCGCCCCCTACAGCTTTGCATCCCCCTTCCCTACCCATACACCATTTTATTTGGGGGACCATTATCCCACACCCCTTATTGCTGCCAAAACCACATGGGCTGGGGGACAGGGCTGATGCCCAGACACGTCCCCCTACCCATACCCCTTCTGTGTGTGGTTGGAAAACTTTT
>XM_015437384.1
TTCCCGGAGGGTCCACATGGGTCGGGTCGGGCGCGCTCCCGTGCAGCCGGCTCCGGCCCGGACCGCCCCATGCGCTCTCCCTCCCGGCCTTggcgcaggcgcaggcgcgggcacacgcgccgccgcCCGCCGGTCCTTCCCTTCGGCGGAGGTGGGGGAAGGAGGAGTCATCCCGTTTAACCCTGGACTCCCCGAACTCTCCTTAATTTGCTAAATTTGCGGCTTGCTAATTcttcctcctttctcttcccttccttccttcTGGCTCACTCCCTGCCCCGATAGCAAAGTCTGGTTTATATTCAATGCAAATTGGAGCAAACCCTACCCTTCACCTCTCTGCCGCCACCCCCCATCTTTCTACATTGCTTTCCATCGAACTCTGCAAATTTTGCAATAGGGGGAGGGATTTTTAAAATTGCATTTGCAAAGTTCGGTGTCTGGGCTGGCGAGTGGGGGAGGGAGGGAATGGGGAGTAGGCCCCGCCCCTACCGTCCTTTGCAAATAAAAATCTAGCGGGGCGGGGGGGAGGAGCAGGAAGTGGCGGTGCGAGGGCTGCTGCACAGCGAGCAGAGCCGCGGTCCGGACGGCAGCGCGTGTCTCGAGCTCTCCGCCTCCCCCCGCCCGCCAGCCGAGGCAGCTCGAGCCCAGCCCGCGGCCCcagcagcagcgccgagagcagccccagtagcagcGCCATGGCCGGGTGGAACGCCTACATCGACAACCTCATGGCGGACGGGACCTGTCAGGACGCGGCCATCGTGGGTTACAAGGACTCGCCCTCCGTCTGGGCCGCCGTCCCCGGGAAAACCTTCGTCAACATCACGCCAGCTGAGGTGGGTGTCCTGGTTGGCAAAGACCGGTCAAGTTTTTACGTCAATGGGCTGACACTTGGGGGCCAGAAATGTTCGGTGATCCGGGACTCACTGCTGCAGGATGGGGAGTTTAGCATGGATCTTCGTACCAAGAGCACCGGTGGGGCCCCCACCTTCAATGTCACTGTCACCAAGACTGACAAGACGCTAGTCCTGCTGATGGGCAAAGAAGGTGTCCACGGTGGTTTGATCAACAAGAAATGTTATGAAATGGCCTCCCACCTTCGGCGCTCCCAGTACTGACCTCGTCTGTCCCTTCCCCTTCACCGCTCCCCACAGCTTTGCACCCCTTTCCTCCCCCATACACACATACACCATTTTATTTTTTAGGCCATTACCCCATACCCCTTATTGCTGCCAAAACCACATGGGCTGGGGACCAGGGCTGGATGGACAGACACCTCCCCCTACCCATACCCCTCCTGTGTGTGGTTGGAAAACtttgttttttgggttttttttttttttttttttCTGAATAAAAAAGATTCTA

Publications

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