Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name HMGB3P19
Plot displaying the genomic locations of a retrocopy (in chr10) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr10:53758717-53759727  UCSC
Strand +
Parental Sequence XM_030807289.1
Parental seq. overlap 388 bp
Parental seq. overlap (%) 10.6%
Genomic Region Intergenic
Retrocopy Summary HMGB3P19, located on chr10:53758717-53759727, is a retrocopy of the parental gene HMGB3. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name HMGB3
Full Name N/A
Also known as HMGB3
Coordinate chrX:136148604-136156094
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens HMGB3P36
Gorilla Gorilla gorilla HMGB3P23
Orangutan Pongo abelii HMGB3P26
Green monkey Chlorocebus sabaeus LOC103232742P4
Rhesus Macaca mulatta HMGB3P27
Baboon Papio anubis HMGB3P21
Golden snub-nosed monkey Rhinopithecus roxellana HMGB3P17
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>HMGB3P19
aacccaGAGGTCTCTGTCAATTTTGCGGAATTTTCCAAGAAATATTCTGAGAGCTGGAAGACAATGTCGGTGAAAGAGAAgtccaaatttgatgaaatggCAAAGGTGGATAAAGTATGCTAGGATCGAGAAATGAAGGATTATAGACCAgctaaagaggaagaaagaagaaagagccTAACGTCCCCAAAAGGCCACCGTCTggactctAACTGTCTGGATTCTTCATGTTCTGTTCAGAATTCCACCCCAAGATCAGATCCGCAAATCCTGGCATCTCTATTGGagatgtggcagctgggtgagATGTGGAATAGCTGAAGTGACAGTGAAAAGCAGGCTGATGTCGCTAAGGCGGCAAAGCTGAAGAAGAAATATGAGAAAGAGGTTGCTGACTGTAAGTTGAAAGGAAAGTTTGACGGTGCAAAGGGTCTTGCTAAAGTTGCCTGGAa
>XM_030807289.1
GCccgctcccgccgccgccgccgccgctgccgccgcagCGCCCGCACAACTTTCCGGCCCGCGCCGCCGCGAGCGCGCCCTGCTGCCGCCTCTCCCTACCTCTACTCGCCGCTGCCTTCCCGCCCCCTCCGCCTTCCCTCCTGCTAGGCGGCCGGGAAGGAAGAAGCAATTCAGTCAGGATGGCTAAAGGTGACCCCAAGAAACCAAAGGGCAAGATGTCCGCTTATGCCTTCTTTGTGCAGACGTGCAGAGAAGAACATAAGAAGAAAAACCCAGAGGTCCCTGTCAATTTTGCGGAATTTTCCAAGAAGTGCTCTGAGAGGTGgaagACGATGTCCGGGAAAGAGAAATCTAAATTTGATGAAATGGCAAAGGCAGATAAAGTGCGCTATGATCGGGAAATGAAGGATTATGGACCAGCTAAGGGAGGCAAGAAGAAGAAGGATCCTAATGCTCCCAAAAGGCCACCGTCTGgattcttcctgttctgttcagAATTCCGCCCCAAGATCAAATCCACAAACCCCGGCATCTCTATTGGAGACGTGGCAAAAAAGCTGGGTGAGATGTGGAATAATTTAAATGACAGTGAAAAGCAGCCTTACATCACTAAGGCGGCAAAGCTGAAGGAGAAGTATGAGAAGGATGTTGCTGACTATAAGTCGAAAGGAAAGTTTGATGGTGCAAAGGGTCCTGCTAAAGTTGCCCGGAAAAaggtggaagaggaagatgaagaagaggaggaggaagaagaggaggaggaggaggaggaggatgaataaagaaactgtttaTCTGTCTCCTTGTGAATACTTAGAGTAGGGGAGCGCCGTAATTGACACATCTCttatttgagaagtgtctgttgccCTCATTAGGTTTAATTACAAAATTTGATCACGATCATATTGTAGTCTCTCAAAGTGCTCTAGAAATTGTCAGTGGTTTACATGAAGTGGCCATGGGTGTCTGGAGCACCCTGAAACTGTATCAAAGTTGTAcatatttccaaacatttttaaaatgaaaaggcacTCTTCGTGTTCTCCTCACTCTGTGCACTTTGCTGTTGGTGTGACAAGGCATTTAAAGAtgtttctggcattttttttttttttatttgtaaggtGGTGTTAACTATGGTTATCGGCTAGAAATCCTGAGTTTTCAACTGTATATATCTATAGtttgtaaaaagaacaaaacaaccgAGACAAACTCTTGATGCTCCTTGCTCGGCGTTGAGGCTGTGGGGAAGATGCCTTTTGGAGAGGCTGTAGCTCAGGGTGTGCACTGTGAGGCTGGACCTGTTGACTCTGCAGGGGGCATCCATTTAGCTTCAGGTTGTCTTGTTTCTGTATATAGTGACATAGCATTCTGCTGCCATCTTAGCTGTGGACAAAGGGGGGTCAGCTGGcatgagaatattttttttttaagtgcggTAGTTTTTaaactgtttgtttttaaacaaaccaTAGAACTCTTCATTGTCAGCAAAGCAAAGCTGCATCAATGAAAGTTCAAGAACCTCCTGTACTTAAACACGATTTGCAAcgttctgttattttttttgtatgtttagaatgctgaaatgtttttgaagttaaataaacagtattacatttttaaaactgttctCTATTATAACAGTCAATTTCTGACTCACAGCAGTGAACAAACCCCCACTCCATTTTATGTGGAGACTGGCCTCCCTATAAATGTGGTGGCTTCTTTTCTTACTCAGTGGCCAGTTCACTTAGGGCTGAGATGAAGGAGAGGGCCACTTGAAGCTGCTGTGTGATTTTGTTTGTGTCTGAGTGGCATTCAGATGAAGTCTGGAGGAGCTAGGAGAAGGACATAGGCAAGGTTCAGCAGCCTTCCAAGGTATAGGAAGGTGGGTGATAGGACAGGCTATCTAGGTTAACTTTtgtcccacctccaccccctatTTTGTGGGGCCAAATGCATTGCTAAACAGCAATTTCAGAGTGTATGGTGTGTCAAAAATTAaggccttattttttttctctttcacccCTACCCCCCGTGCTCCTGGCACATATCACGTTATTTGTGGTGCCCAACATTTGGGGTCTTGAGCCTGCTGCTGGTCTCCTGGATGCCGGTGAGGGTATGTGGGATGGGGTGGTGGGGTAGGGGACAGCATCCTTTTTTTGCTCCTACTTTACTCCTTCAAAACACCAAACACCCCAAGGAAGATTATAGGCACCATCTTGGGCCACCTGAGCTATAGGGCAGGCTAATGGAATCAACCATTTCTAAGCACTAAATGTATCATGAAAAGTTGAATGGCCTACTCATAAGTTTAGCTCATTCACTGGAAATGTAGATTGATGTTCAATGTTAAACTGGAAGAAGCTTGGTTTGTGTGTCAGTGGTTATATTAGTGGCTAGTGTAACATTTTATCCAGGTTGGGGTGAGGGGAGATGGCCACAGTAGCAAGTGGTGACACTAAATACCATTTTGAAGGCTGATGTGTATATACATCATTACTGTCTGTAGCAATGAAGGATACAGTACTGTGTTGTGGGTGAGTGTTGCTATTGCCCAGCATTAATATTTGGGTGTGTATGTTTGAGGCTATGAAACACACAGGAGTGTTTTCGTGGTATTAATTTTAAGAGAAAGCAGCTCTTTCTTAAAATTCACTGTTCAGAAACTTGCATGTCTGGAGGCGGTGTCCTCTCCACCCTGTCGGGTCCTGGATGAGTACAAGTTATGGTCACGGTCACAGCCTGATCTCTATGTATTCATAGCCATTCGCTCTCCCATCAGAACTGTTTGTCCTGAATGTGTTCCTCTAGTTCTAGAAAATGACTACTAATTTAAAAAACTCGGTTATGAGGTTTGCCCAGAGGCACTTGTTCCAGAATTtcccctcctgcttcagccatgtCCTTGTCACTTGGCATTCTAAGCCAAAGCTTTAGCTTCTCAATTCATGATGTGCTAGGCCAAGATTCGAGAGCTGTTGCCAGCCTCGTCAAATATGGAAGAGAAACAACCTGCAGTCAAAAGGGAGTGATTTGTTAAGTGGTGCGCGTCTGTCTCGTAACTAGATGTACCAACCAGGGAAGGGCAAAGGATGGAAAGGGGTAACTTTTGTGTTTCCAAAGTAGCTAAGCAGAAGTGGGGAAGCAGTTTAGCCAAATGATCTTTGATTGGGCAAACATTGAGTTTTAAAGAGGCTGTCAAGTTGAGGCCACTTGGTCCATTAGCTGGTGCAGCAAGATCACTACTCGATGTTTTCACACTGTCACAAGATGGCTCTTCTAGTGGAATAATGCCCTAGTTTCTCTGAGATGATGTAAGTGGCATGATGTTACCTAAGGCTTAGGCTTAGCTTGATTTCTGGGCCCACTGTATGTGTTCTTAAGATGCCaacctgttgcttttttttttttttttttttttccatttaaaaggaTAGTACCTACTCCCTCTAACCACCTCACCCCATTCTTGAATGACATTTTATCCTTCGGAAAGAACAAGGCTGTGATGTAGTGACTGTTGTCTGTGTCTCCTTTGTGTGTCTGTTCTTGTCACAAATGTATTTGGGGACGTTGGATGCATTCATTTTCTGTAATAAAGTTTCTTAATCACTCTTCCCAAAAAGTAA

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