Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name HMGN2P2
Plot displaying the genomic locations of a retrocopy (in chr1a) and its respective parental gene (in chr24). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr1a:6027139-6028236  UCSC
Strand +
Parental Sequence XM_030805711.1
Parental seq. overlap 1033 bp
Parental seq. overlap (%) 79.3%
Genomic Region Intergenic
Retrocopy Summary HMGN2P2, located on chr1a:6027139-6028236, is a retrocopy of the parental gene HMGN2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name HMGN2
Full Name N/A
Also known as HMGN2
Coordinate chr24:26350596-26354158
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens HMGN2P31
Chimpanzee Pan troglodytes HMGN2P26
Bonobo Pan paniscus HMGN2P24
Gorilla Gorilla gorilla HMGN2P27
Orangutan Pongo abelii HMGN2P26
Green monkey Chlorocebus sabaeus HMGN2P20
Crab-eating macaque Macaca fascicularis HMGN2P42
Rhesus Macaca mulatta HMGN2P51
Baboon Papio anubis HMGN2P41
Marmoset Callithrix jacchus HMGN2P1
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>HMGN2P2
ACCGCCAGCATGCCCAAGAGAAAGGCTGAAGGGGATGTTAAAGGAGATAAAGTTGTGGTGAAGGATGAATCACAGAGAAGATCATGAGGTTATCTGCTAAATCTGCTCCTCTAAAGCCAGAGCTCAAGCCTAAAAAGGCCCATGCAAAGACAGGAGAGAAGATACCCatagggaaaaagggaaaagctgaTGCTGGCCAGGAGGGGAATAACTCTGCAGAAAATGGAGATGCCAAAACAGACCAGGCACAGAAAGCTGAAGGTGCTGCAGATGCCAAGTGAAGTGTGTGCATTTTTGATAACTGTGTACTTCTGGTGACTGTAGAGTTTGAAATACGATTTTTTTtatcaagttttataaaaatgcagaattttgttttacttttttttttttaagttatgttGTTAGCACACACAAcacttcattgttgtttttggGGGAAGGGGCATATGTCACTAATAGAATGTCTCTGAAGCTGGATTGATGTGGCGAAACACCTTTCCCTTCTAGTTTTGAGAGACTTCCTCTTGGCTCCCAGAAGGAGGGATTCCCTGATTTTGACACAAATGGCCACCTTGGCACAAAGCCTTGTGGTATGGAAAAACAAATTCGTTTTatgtcctcttctccctttccgTCTTTCAGCATAGACTTAACTCCCTTAAGCCTAGACATCTGTTGGGACCTGACTCCCAATCATTGGTTACAAGTGTGTGAAGCAATCTGGACTTTCCAGTGATGCCACTGAGATGGCACCTGTCAAAAGAGAAGTGGCTCCATTTCCAGATTGTGGATCTTCAGAtaaattctgccattttcttttcacttccaGAAAGTCAGCGTCGGCTTGTGAAAAGTTGTTAAACAGTATGCTAAATGTGAAATGTCAACCCTCACTCTAAACTTTCCCTGTTCAGAGCATAAGATGAATACTTCATTGGGTTTTATAGTGGCTTTCTGATTTTTGGTAGTCCATTGAAGAAGGGAGTATAAAAGTTATTGTATACTGTTAATGATTGTCTGCCCATGTCCTGCCTGAAATACCATGATTATTTATGGAAAGTATCTTTAATAAAGCTGGATACAGtttgcttggaa
>XM_030805711.1
TGGGCCAATGAACGGCGGCGGGAGGTGAAATCCGGTTCTAACCGGTCCGGGGCTCCCAGCGCTATAAAAACTTTATAAACCCCCCGGAGCCTGAGCAGTGTGAAGAAGAAGAGGCGAGAACGACCCCCGGACCGACCAAAGCCCGCGCGCCGCTGCATCCCGCGTCCAGCACCTACGTCCCGCCGCCGTCGccgccgccaccatgcccaagagAAAGGCTGAAGGGGATGCTAAGGGAGATAAAGCCAAGGTGAAGGACGAACCACAGAGAAGATCCGCGAGGTTGTCTGCTaaacctgctcCTCCAAAGCCAGAGCCCAAGCCTAAAAAGGCCCCTGCAAAGaagggagagaaggtacccaaagggaaaaagggaaaagctgaTGCTGGCAAGGAGGGGAATAATCCTGCAGAAAATGGAGATGCCAAAACAGACCAGgCACAGAAAGCTGAAGGTGCTGGAGATGCCAAGTGAAGTGTGTGCATTTTTGATAACTGTGTACTTCTGGTGACTGTACagtttgaaatactattttttatcaagttttataaaaatgcagaattttgttttacttttttttttttttttttaaagctatgttgTTAGCACACAGAAcacttcattgttgtttttggGGGAAGGGGCATATGTCACTAATAGAATGTCTCCAAAGCTGGATTGATGTGGAGAAAACACCTTTCCCTTCTAGTTTTGAGAGACTTCCTCTTGGCTCCCAGGAGGAGGGATTCCCTGACTTTGACACACATGGCCACCTTGGCACAAAAGCCTTGTGgtatggaaaaacaaatttgtttttatgtcctcttctccctttccatctTTCAGCATAGACTTAACTCCCTTAAGGCCAGACATCTGTTGGGACCTGACCCCTAGTCACTGGTTACCAGTGTGTCAGGCAATCTGGACTTTCCACTGATGCCACTGAGATGGCACCTGTCAAAAGAGCAGTGGTTCCATTTCTAGATTGTGGATCTTCAGAtaaattctgccattttcatttcacttcctgAAAGTCAGGGTCGGCTTGTGAAAAGTTGTTAAACAACATGCTAAATGTGAAATGTCAACCCTCACTCTAAACTTTCCCTGTTCAGAGCATCAGATGAAGACTTCATTGGGTTTTATAGTGGCTTTCTGATTTTTGGTAGTCCATTGAAGAAGGGAGTTTGAAAGTTGTTGTATACTGTTAACGATTGTCTGCCGATGTCCTGCCTGAAATACCATGATTGTTTATGGAAAGTATCTTTAATAAAGCTGGATACAGTTTGGCTTGGAA

Publications

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