Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name HSP90AB1P4
Plot displaying the genomic locations of a retrocopy (in chr20) and its respective parental gene (in chr17). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr20:71796414-71798959  UCSC
Strand -
Parental Sequence XM_030797479.1
Parental seq. overlap 2332 bp
Parental seq. overlap (%) 85.9%
Genomic Region Intergenic
Retrocopy Summary HSP90AB1P4, located on chr20:71796414-71798959, is a retrocopy of the parental gene HSP90AB1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name HSP90AB1
Full Name N/A
Also known as HSP90AB1
Coordinate chr17:7671706-7678648
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens HSP90AB2P
Chimpanzee Pan troglodytes HSP90AB1P2
Bonobo Pan paniscus HSP90AB1P2
Gorilla Gorilla gorilla HSP90AB1P2
Orangutan Pongo abelii HSP90AB1P2
Green monkey Chlorocebus sabaeus HSP90AB1P7
Crab-eating macaque Macaca fascicularis HSP90AB1P2
Rhesus Macaca mulatta HSP90AB1P2
Baboon Papio anubis HSP90AB1P2
Golden snub-nosed monkey Rhinopithecus roxellana HSP90AB1P2
Marmoset Callithrix jacchus HSP90AB1P4
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>HSP90AB1P4
CTCTGGAGTCACTCCGGCACAGTGTTTGTGCGGCCTGTGTGTTGGAGAGCCAGCCCACCTTGCTCTCTAATATGTGTAAGCCTTTTCTTTTCAAGATGCCTGAGGAAGTGCACCatggagaggaggaggtggagactTTTGCCTTTCAGGCAGAAATTGCCCAACTCATGTTTCTCGTCATCAATACCTTCTAATCTAACAAGGAGATTTTCCGTTGGGATTTGATCTCTAATGCTTCTGATGCCTTGGACAAGATTCGCTATGAAAGCCTAACAGATCCTTCCAAGTTGGACAGTGGTAAAGTGCTGAAAATTGACATCATCCCCAATACTCAGGAACATACCCTGACTTTGGTGGACATAGGCATTGGCATGACCAAAGCTGATCTAATAAATAATTTGGGAATCATTGCCAAGTCTCGTACTAAAGCATTCATGGAGGCTCTTTGGGCTGGTACAGACATCTCCATGATTGGGCAATTTGGTGTTGGCTTTTATTCTGCCTACCTGGTAGCAGAGAAAGTGGTTGTGATCACAAAGCCCAATGATGATGGTATGTCTGGGAGTCTTCTACTGGAGGTTCCTTCACTGTGTGTGCCGACCATGGTGAGCATATTGGCAGGGGTACCAAAGTGATCCTCCACCTTAAAGAAGATCAGACAGAATACTTAGAAGAGAGGCGGGTCAAAGCAGTAGTGAAGAAGCACTTTCAGTTCCTAGGCTATCCCATCACCCTTTATCTGGAGAAGGAACGAGAGAAAGAAATTAGTGATGAtaaggcagaggaagagaaaggtgagaaagaagaggaaaataaagacgATGAAGAAAAGCCCAAGATCAAAGATGTGGGTTCAGATGAGGAGGATGACAGTGGTAAggataagaagaagaaaactaagaagatcaaaaagaaatacattgatCAGAAAGAACTAAACAAGACCAAGCCTATTTGGACCAGAAACACTGAAGACACCACCCAAGAGGAGTATGGAGAATTCTATAAGAGCCTCACCAATGACTGGAAAGACCACTTGGCAGTCAGGTACTTTTCTGTAGAAGGTCAATTGGAATTCAGGGCATTGCCACTCCTTCCTCATCAGGCTCCCTTTGATCTTTTtgagaacaagaagaaaaagaacaacatcAAACTCTATGTCCATCGTGTGTTCATCAGGGACAGCTGTGATGACTTGATACCAGAGTGTCTCAACTTTATCCGTGGTGTGGTTGACTCTGAGGATTTGCCACTGAACGTCTCCCGAGAAATGCTCCAGCAGAGCAAAATCTTGAGTCATTCACAAAAACATTGTTAAGAAGTGCCTTGAGCTCTTCGCTGAGCTGGTGGAAGACAAGGAGAATTACAAGAAATTCTATGAGGCATTCTCTAAAAATCTCAAGCTTGGCATCCACGAGGACTCCACTAACTGATGCCACCCATCTGAGCTGCTGTATTATCACACCTCCCAGTCTGGAGATGAGATGACATCTTTGTTAGAGTATGTTTCTTGCATGAAGGAGATACAGAAGTCCATCTATTACATCACTGGTGAGAGCAAAGAGCAGGTTGCCAACTCAGCTTTTGTGAAGCGAGTATGGAAACGGAGCTTCAGGGTGGTGTATATGACCGAACCCATTGACGGCTATGTGTGCAGCAACTAAAGGAGTTTGATGGCAAGAGCCTGGTCTCAGTTACCAAGGAGGGCCTGGATCTACTTGAGGAtggggaggagaagaagagaatGGAAGAGAGGAAGGCAAAGTTTGAGAACCGCTGCAAGATCATGAAAGAAATCTTAGATAAGAAGGTTGAGACGGTGACAATCTCCAATAGGCTTGTGTCTTCATCCTGCTGCATTGTGACCAGCACCTACAGCTGGACAGCCAATATGGAGCAGATCATGAAAGCCCAGGCACTTCGGGTCAACTCCACCGTGGACTATATGATGGCCAAAAAGCACCTGGAGATCAACCCCAACCACCCCATTGTGGAGATGCTGtggcagaaggctgaggcagacaagAATGACAAGGCAGTCAAGGACCTGGTGGTGCTGCCATTAGAAACTGCCTTGCTGTCTTCTGGCTTTTCCCTTGAGGATCCCCAGACCCATTCCAACCGCATCTACCACATGATCAAGCTAGGTCTAGGTATTGATGAAGATTAAGTGGCAGCAGAGGAACACAGTGCTGTGGTTCCTGATGAGATCACCCCTCTTGAGGGTGATGGGGATGCGTGATGCATCTCGCATGGAAGAAGTAGTTTAGGAGTTCATAGTTGGAAAACTCACCATTGGATAGTGTCCCCATGGATCCCATGGCATCCTCGAGTGCCCACTTGGCTCCCCCTGCTGAtgtctagtgtttttttttttctctcctgtcctTGTGTTGAAAGCAGGAAACAAGGGTGTCAAGCCCCCATTCCCTCCCTACTCTGACAGCAGTATTGGATGTTATATATTatgaggttttttgtttattttgttcattttgttctgAAATTAAAGTATGCAAAATAAAGAATATGTCATTTTTATACAA
>XM_030797479.1
tTTTTCGGACCATGACGTCAAGGTGGACTGGTGGCGGCAGGTGTGGGGTTGACAATCATACTCCTTTAAGGCGGAGGGATCCACGGGAGGGCTGCTGTACTGTGTTTCGCCCTATATAGGGCGACTTGGGGCAGGCAATAGCTCTCTCGAGTCATTCCGGCGCAGCGTTTGTGCTGCTTGGGTATCAGAAAGCCAGCCCGCGTTGCTCACCATTACGTGTAAGCCTTTTCTTTTCAAGatgcctGAGGAAGTGCACCatggagaggaggaggtggagactTTTGCCTTTCAGGCAGAAATTGCCCAACTCATGTCCCTCATCATCAATACCTTCTATTCCAACAAGGAGATTTTCCTTCGGGAGTTGATCTCTAATGCTTCTGATGCCTTGGACAAGATTCGCTATGAGAGCCTGACAGACCCTTCGAAGCTGGACAGTGGTAAAGAGCTGAAAATTGACATCATCCCCAATCCTCAGGAACGCACCCTGACCTTGGTAGACACAGGCATTGGCATGACCAAAGCTGATCTCATAAATAATTTGGGAACCATTGCCAAGTCTGGTACTAAAGCCTTCATGGAGGCTCTTCAGGCTGGTGCAGACATCTCCATGATTGGGCAGTTTGGTGTTGGCTTTTATTCTGCCTACCTGGTGGCAGAGAAAGTGGTTGTGATCACAAAGCACAACGATGATGAACAGTATGCTTGGGAGTCTTCTGCTGGAGGTTCCTTCACTGTGCGTGCTGACCATGGTGAGCCCATTGGCAGGGGTACCAAAGTGATCCTCCATCTTAAAGAAGATCAGACAGAGTACTTAGAAGAGAGGCGGGTCAAAGAAGTAGTGAAGAAGCATTCTCAGTTCATAGGCTATCCCATCACCCTTTATTTGGAGAAGGAACGAGAGAAGGAAATTAGTGATGatgaggcagaggaagagaaaggtgagaaagaggaggaagataaAGATGATGAAGAAAAGCCCAAGATCGAAGATGTGGGTTCAGATGAGGAGGATGACAGTGGTAAggataagaagaagaaaactaagaAGATCAAAGAGAAATACATTGATCAGGAAGAACTAAACAAGACCAAGCCCATTTGGACCAGAAACCCTGATGACATCACCCAAGAGGAGTATGGAGAATTCTACAAGAGCCTCACCAATGACTGGGAAGACCACTTGGCAGTCAAGcactttTCTGTAGAAGGTCAGTTGGAATTCAGGGCATTGCTATTCATTCCTCGTCGGGCTCCCTTTGACCTTTTtgagaacaagaagaaaaagaacaacatcAAACTCTATGTCCGCCGTGTGTTCATCATGGACAGCTGTGATGAGTTGATACCAGAGTATCTCAATTTTATCCGTGGTGTGGTTGACTCTGAGGATCTGCCCCTGAACATCTCCCGAGAAATGCTCCAGCAGAGCAAAATCTTGAAAGTCATTCGCAAAAACATTGTTAAGAAGTGCCTTGAGCTCTTCTCTgagctggcagaagacaaggagaaTTACAAGAAATTCTATGAGGCATTCTCTAAAAATCTCAAGCTTGGAATCCACGAAGACTCCACTAACCGCCGCCGCCTGTCCGAGCTGCTGCGCTATCATACCTCCCAGTCTGGAGATGAGATGACATCTCTGTCAGAGTACGTTTCTCGCATGAAGGAGACACAGAAGTCCATCTATTACATCACTGGTGAGAGCAAAGAGCAGGTGGCCAACTCAGCTTTTGTGGAGCGAGTGCGGAAACGGGGCTTCGAGGTGGTATATATGACCGAGCCCATTGATGAGTACTGTGTGCAGCAGCTCAAGGAATTTGATGGGAAGAGCCTGGTCTCAGTTACCAAGGAGGGTCTGGAGCTGCctgaggatgaggaggagaagaagaagatggAAGAGAGCAAGGCAAAGTTTGAGAATCTCTGCAAGCTCATGAAAGAAATCTTAGATAAGAAGGTTGAGAAGGTGACAATCTCCAATAGACTTGTGTCTTCACCCTGCTGCATTGTGACCAGCACCTATGGCTGGACAGCCAATATGGAGCGGATCATGAAAGCCCAGGCACTTCGGGACAACTCCACCATGGGCTATATGATGGCCAAAAAGCACCTGGAGATCAACCCTGACCACCCCATTGTGGAGACGCTGCGGCAGAAGGCTGAGGCCGACAAGAATGATAAGGCAGTTAAGGACCTGGTGGTGCTGCTGTTTGAAACCGCCCTGCTATCTTCTGGCTTTTCCCTTGAGGATCCCCAGACCCACTCCAACCGCATCTACCGCATGATCAAGCTAGGTCTAGGTATTGATGAAGATGAAGTGGCAGCAGAGGAACCCAGTGCTGCAGTTCCTGATGAGATCCCCCCTCTGGAGGGCGATGAGGATGCGTCTCGCATGGAAGAAGTCGATTAGGTTAGGAGTTCATAGTTGGAAAACTTCTGTGCCCTTGTATAGTGTCCCCATggctcccactgcagcctcgagtgCCCCTGTCCCACCTGGCTCCCCCTGCTGGTGTCTAGTGTTGTTTTCCCTCTCCTGTCCTTGTGTTGAAGGCAGGAAACCAAGGGTGTCAAGCCCCATTCCCTCTCTACTCTTGACAGCAGGATTGGATGTTGTGTattgtggtttattttattttcttcattttgttctgAAATTAAAGTATGCAAAATAAAGAATATGCCGTTTTTATACA

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