Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name HSPD1P10
Plot displaying the genomic locations of a retrocopy (in chr9) and its respective parental gene (in chr22a). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr9:1430753-1432985  UCSC
Strand +
Parental Sequence XM_003253883.4
Parental seq. overlap 1915 bp
Parental seq. overlap (%) 81.2%
Genomic Region Intergenic
Retrocopy Summary HSPD1P10, located on chr9:1430753-1432985, is a retrocopy of the parental gene HSPD1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name HSPD1
Full Name N/A
Also known as HSPD1
Coordinate chr22a:97793479-97807073
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens HSPD1P9
Chimpanzee Pan troglodytes HSPD1P13
Bonobo Pan paniscus HSPD1P12
Gorilla Gorilla gorilla HSPD1P10
Orangutan Pongo abelii HSPD1P13
Green monkey Chlorocebus sabaeus HSPD1P2
Crab-eating macaque Macaca fascicularis HSPD1P15
Rhesus Macaca mulatta HSPD1P16
Baboon Papio anubis HSPD1P15
Golden snub-nosed monkey Rhinopithecus roxellana HSPD1P18
Marmoset Callithrix jacchus HSPD1P6
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>HSPD1P10
TGCAGAAATGCTTCGATAACTCACAGTCTTTCACTAGGTGAGAACTGTGTCCAGGGTACTGGCTCCTCATCTCACTTGGGCTTATGTTAAAGATGTAAAATTTGGTATAGATGCCTAAGCCTTAATGCTTCAAGGTGCAGACCTTTTAGCCGATGCTGTAGCCGTTACGATGGAGTCAAATGGAAGAGCAGTGATTATTGAACACAGCTGTGGAAATCCCAAAGTAACAAAAGATGGTGTGACTGCTGAAAAATCTATTGACTTaaaggataaatataaaaatattggagTTAAACTTCTTCAAGGTGTTGCCAATAACATGAATGAAGAGGCTGGGGACGACATTACAACTGTATTGTTCTGGCATGCTCTATTGCCAAGGATGGCTTCAAGGTGCTAATCTATTGGAAATGGGGAGAGGTGTGATGCTAGCTGTTCATGCTGTAATTGCTGAACTTGAAAAGCAGTCTAAACCTGTGACCACCCCTGAAGAAATTGCTCAGGTTGCTACAATTCTACAAATGGAGACAGACCATAGAAAGGTTGCCATCGaattcttaaaaaaaaaaagaaaggttgcCATCACactaaaggaaggaaaaagcacTGAATGATGAATTAGACATTACTGAAGGCATGAAGTTTGATTGTggatatatttttccatattttattaatacaCCAGAAGGCTAGAAATGTGAATTCCAGGATGCCCATGTTCTAATGAGTGAATAGAAAATTTCTAGTGTCCAGTCCATTGTACCTGCTCTTGAAGTTGCCAATGCTCACCATAAAACTTTGATCATAATTGTTGAAGATATTGATGGAGAAGCTCTAAGTACATTCGTTTTGAGTAGGCTAAAAGTTGGTCTTCACATTATAGCAGTCAAAGCTCCAGGATTTGATGAACAATTGAAAGAACCAGCTTAAAGATATGGCTATTGCTACTGGTGGTGCAGTGTTTGGAGATGAGGGCTTGACCCTAAATCTTGAATATGTGCAGCCTCATGACTTAGGTAAAGTTGGAGAGGTCATTGTGACTAAAGATTATGCTATGCTCTTAAAAGGAAAAGGTGAAAAGgctcaaattgaaaaaaaacatATTCAAGAAATCATGGAGCAGTTAGATGTCACAATTAGTGAATACGAAAAGGGAAAACTGATAGAATGGCTGGAAAACTTTTCAGATGGAGTAGCTTTGCTGAAGGTTGGTGGGACAAGTGATGTCaaagtgaatgaaaagaaagacagagttGCGGATCCCTTAATGCTACAATAGCTGCCACTGAAGAAGGCATTGTTCTGGGAAGGGTCTGTGGCCTGCTTTAATACATTCCAGCCTTGTACTCATTGACTCCAGCTAGTGAAGATCAAAACATTGctatagaaattaaaagaatattcaaaattgCTGCAATAACAATTGCTAAAAATGCAGGTATTGAAGGATCTTTTATAGTCGAGAAAATTATGCAAAGTTCTGTAGAAGTTGGTTATGATGCTATGGCCAGAGATTTTGTGAAtatggtgggaaaaggaatcATTGATCCAACAAAGTTCCTGAAAACTGCTTTATTGGATGCTTTTGGGTGGCCTGTTAACTACAGAAATTTTAGTCACAAAAATTCCTAAAGAAGAGAAGGACCCTGGAATAGGTGCAATATGTGGAATGAGAGGTGGTATGAGAGGTGGCATGTTCTAATTCCTAGAATACTGCTTTACCTGTATTAATGAACTACGACAGGAAGCTCAAGGCATTGTTCCTCACCAATAGCTTCATAGAAGTCAGTTGGAGAAAATGACTGAAGAAAAGGCTGGCTGATATTTAAGAAATCACTATAACCATTACTGGTTTCAGTTGACAAAATACATAATGACTTACCGCTGTCATTGTCCAGGCctacagataatttattttgtattttttaataaaacacatttgTACATTCCTAATATTGGGTGCAAAGTCATGTACCAATATATTGCTTTCAACTTAAATCCCTGAAGCATTTTTACTACTGTTCTGTTAAAATTTTAGTGCTTGCCATCACCAGATGAGAATTTAAGCAGTCTTTCTGTGGAGATTGAGAATAATTGTGTACAAAGTAGAGAAATGTCCAATTATGTGACAACTTTtgtataataaaaactattttaaagtt
>XM_003253883.4
CTGCCTGCACACGCGGTGCCGCGGGGCGGGGGTAGAGGCGGAGGGAGGGGACACGGGCTCATTGCGGTGTGCGCCCTGCACTCTGTCCCTCACTCGCCGCCGACGACCTGACTCGCCGCGCGCACGCCCTGCCGCCGCCCCGCAGAAATGCTTCGGTTACCCACAGTCTTTCGCCAGATGAGACCGGTGTCCAGGGTACTGGCTCCTCATCTCACTCGGGCTTATGCCAAAGATGTAAAATTTGGTGCAGATGCCCGAGCCTTAATGCTTCAAGGTGTAGACCTTTTAGCCGATGCTGTGGCCGTTACAATGGGGCCAAAGggaAGAACAGTGATTATTGAGCAGAGTTGGGGAAGTCCCAAAGTAACAAAAGATGGTGTGACTGTTGCGAAGTCAATTGACTTAaaggataaatataaaaacattggAGCTAAACTTGTTCAAGATGTTGCCAATAACACAAATGAAGAGGCTGGGGATGGCACTACCACTGCTACTGTACTGGCACGCTCTATAGCCAAGGAAGGCTTCGAGAAGATTAGCAAAGGTGCTAATCCAGTGGAAATCAGGAGAGgtgtgatgttagctgttgATGCTGTAATTGCTGAACTTAAAAAGCAGTCTAAACCTGTGACCACCCCTGAAGAAATTGCACAGGTTGCTACGATTTCTGCAAATGGAGACAAAGAAATTGGCAATATCATCTCTGATGCAATGAAAAAGGTTGGAAGAAAGGGTGTCATCACAGTAAAGGATGGAAAAACACTGAATGATGAATTAGAAATTATTGAAGGCATGAAGTTTGATCGAGGCTATATTTCTCCATACTTTATTAATACATCAAAAGGTCAGAAATGTGAATTCCAGGATGCCTATGTTCTGTTgagtgaaaagaaaatttctagTGTCCAGTCCATTGTACCTGCTCTTGAAATTGCCAATGCTCACCGTAAGCCTTTGGTCATAATCGCTGAAGATGTTGATGGAGAAGCTCTAAGTACACTCGTCTTGAATAGGCTAAAGGTTGGTCTTCAGGTTGTGGCAGTCAAGGCTCCAGGGTTTGGTGACAATAGAAAGAACCAGCTTAAAGATATGGCTATTGCTACTGGTGGTGcaGTATTTGGAGAAGAGGGGTTGACTCTGAATCTTGAAGACGTTCAGCCTCATGACTTAGGAAAAGTTGGAGAGGTCATTGTGACCAAAGATGATGCCATGCTCTTAAAAGGAAAAGGTGACAAGGCTCAAATTGAAAAACGTATTCAAGAAATCATTGAGCAGTTAGATGTCACAACTAgtgaatatgaaaaggaaaaactgaatgaACGGCTTGCAAAACTTTCTGATGGAGTAGCTGTGCTGAAGGTTGGTGGGACAAGTGATGTTgaagtgaatgaaaagaaagacagagttACAGATGCCCTTAATGCTACGAGAGCTGCTGtagaagaaggcattgttttGGGAGGGGGTTGTGCCCTGCTTCGATGCATTCCAGCCTTGGACTCACTGACTCCAGCTAATGAAGATCAAAAAATCGgtatagaaattattaaaagaacaCTCAAAATTCCAGCAATGACCATTGCTAAGAATGCAGGTGTTGAAGGATCTTTGATAGTTGAGAAAATTATGCAAAGTTCCTCAGAAGTTGGTTATGATGCTATGGTTGGAGATTTTGtgaatatggtggaaaaaggaattattGACCCAACAAAGgttgTGAGAACTGCTTTATTGGATGCTGCTGGTGTGGCCTCTCTGTTAACTACAGCAGAAGTTGTAGTCACAGAAATTCCTAAAGAAGAGAAGGACCCTGGAATGGGTGCAATGGGTGGAATGGGAGGTGGTATGGGAGGTGGCATGTTCTAACTCCTAGACTAGTGCTTTACCTTTATTAATGAACTGTGACAGGAAGCCCAAGGCAGTGTTCCTCACCAATAACTTCAGAGAAGTCAgttggagaaaatgaagaaaaaggctGGCTGAAAATCACTATAACCATCAGTTACTGGTTTCAGTTGACAAAATACATAATGGTTTACTGCTGTCATTGTCCATGCctacagataatttattttgtatttttgaataaaaaacaTTTGTACATTCCTGATACTGGGTACAAGAGCCATGTACCAATGTACTGCTTTCAACTTAAATCACTGAGGCATTTTTACTACTATTCTGTTAAAATCAGGATTTTAGTGCTTGCCACCACCAGATGAGAAGTTAAGCAGCCTTTCTGTGGAGAGTGAGAATAATTGTGTACAAAGTAGAGAAATATCCAATTATGTGACAACCTTTGtgtaataaaaatttgtttaaagttaA

Publications

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