Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC100580069P1
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr17). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr3:81897605-81898765  UCSC
Strand +
Parental Sequence XM_003270423.4
Parental seq. overlap 1004 bp
Parental seq. overlap (%) 73.8%
Genomic Region Intergenic
Retrocopy Summary LOC100580069P1, located on chr3:81897605-81898765, is a retrocopy of the parental gene LOC100580069. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC100580069
Full Name N/A
Also known as LOC100580069
Coordinate chr17:80054930-80057378
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens CYCSP17
Chimpanzee Pan troglodytes CYCSP11
Bonobo Pan paniscus LOC100986481P8
Gorilla Gorilla gorilla LOC101135431P9
Orangutan Pongo abelii CYCSP11
Baboon Papio anubis LOC100997529P10
Golden snub-nosed monkey Rhinopithecus roxellana LOC104672188P6
Mouse lemur Microcebus murinus LOC105875906P13
Rat Rattus norvegicus CycsP9
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC100580069P1
CAGAATTAAATATGAGTGATGTTGAGAAAGGCAAAAAGATTTTTATTCAGAATTGTGTCCAGTGGCACACCATGGAAAAGGAAGGCAAGCACAGACTGGGCTAAATCTCCATGGTCTCTTTGAGCAGAAGACAGATCAGGTCATTAGATTCTCTTACACAGATGCCAATAAGAACAAAGGCATCACCTGGGGAAAGGATATACTGAAGGAGTATTTGGAGAATCTCAAGAAGTACATCCCTGGAACAAAATGATGATATTTTCTGGCATTAAGAAGGCAGAAAGGGCAGACTTGATTGCTTATCTCAGAAAAAGCTACTAATGAGTAATAAATGGTCACTGACTTATTTATTAGAAAAGAGAAACGTCTCATGACTGTACCATAATTTAACAGATCTCATACACCAGAATTCAGATCATAAATGACTGACAGAATATTTTTTGTTGGGTAGTCCTGATATAACTAAGACCAGCCTGTGgttaaatgatcttttttttttattttaatagtaattctgattcagtaaatgCTGCCACTGTTTACTCCTTCTAAAGACATAATTGGACTTAATTAGTAATGTTCAACTTTTTACAAAGATGGCAAATACTATCTTAAAACCTATTGGagattgattttatatttagatttatataacttgttatgtgaatatatttaaatactagGGAAATTCCTTCACTGTCTCAGAGCAAAGCAAGATTCAGCTGTTTTGTGTTCATATGTGTCTTAAAGGCAAGGGCTAAAGAAAGGTGGCAAATGTCTACTTTATGTTTTTGGTCTTAACTATGCCAATGTAATTAGAATTCCCTGTATCTAAAATGGTTCCTTTTACTTACTGAAAGGCATTTTAGTGTGGTTTCTGTGTAATATCAAATAAAGATTATTTAACACTTCTCACATTTTATCTATCATCTGTAAGGtcagatgctttaaaaaatagcaaGGTAAATGTCATTCTTGAATTCTTTACTATCTAAATGAGACTAAGTTATAATTTAGGACTGTCTTTAAACAGCCATTCAGAAACCTAAAACTGGAGAACTTCTGTGTATTTACGACTGGGAATGGTACTTTTGCCAACTTAAAAGGATCAAAGTAGAGGAGatacacacaaatttaaaaattatgtgtgcTCATAAgact
>XM_003270423.4
AGGGCGCGGGAGCGCGGAGAGGGTTTGGTTGCACTTACACCGGTACTTAAGCACGGACCGGCGTGTCCTTGGACTTACAGAGTGGGGACGTCCGGCTTCGGAGCGGGAGTGTTCTTTGCGCCAGCGACTAAAAAGAGAATTAAATATGGGTGATGTTGAGAAAGGCAAGaagatttttattatgaagtgTTCCCAGTGCCACACCGTTGAAAAGGGAGGCAAGCACAAGACTGGGCCAAATCTCCATGGTCTCTTCGGGCGGAAGACAGGTCAGGCCCCTGGATACTCTTACACAGCCGCCAATAAGAACAAAGGCATCATCTGGGGAGAGGATACACTGATGGAGTATTTGGAGAATCCCAAGAAGTACATCCCTGGAACAAAAATGATCTTTGTCGGCattaagaagaaggaagaaagggcagACTTGATAGCTTATCTCAAAAAAGCTACTAATGAGTAATAATTGGCCACTGCCTTATTtattacaaaacagaaatgtctCATGACTTTTTTATGTGTACCATTCTTTAATCTCATACACCAGAATTCAGATCATGAATGACTGACAGAATATTTTGTTGGGCAGTCCTGATTTAAAACTAAGACTGGCTTGTGGTTAAATGAATATGTtcagtttttgaattttaatagtaACTCCAATTCAGTAAATGCTATCACTGTTTACCCCTTTTAAAGATATGATTAGACTTCGTTAGTAACGTTCAACTTTTCACAAAGATGGTGAGTGCCATCTTAAAACTTACTGGAGattggttttatatttagatttatataactggttatgtgaatatatttaaatactggGGAAATTCCTTCACTGTCTTAGAACCAAGCAAGATTCACCTGTGTTTTGTGTTCATTTGCCTCTTAAAGGGAAGGGTTGAAGATAAATAAGGTAGCAATGTCTATAGTTTTGACCTTAACTATGCCAATCTAATTATAATTCCCTGTATTTAAAGTGGTTCCTTTTACTTATCGAAAGACATTTTAGTGTGGTTTATGTGTAATATTAAAGATTATTCAACACCTCTCACATCTTACAGATCTATAAGGTcacatgcttttaaaatagtAGCAAGTTAAACTTCACTCTTGAATTCTTTACAATCTAAGTCAAACTAAGTTATAATTTAGGATTGTCTTTAAACAGCCATTCAGAAACATAAAACTGTAGAACTGTGTATTTGTGATTGGGAATGGTGCTTTTGCCAACTTAAAAGGATTAAAGTAACAGAGATATacgcaaattttaaaattatatgtgatCACAAGactaaagataattaaaaagaaaaccacagattaTGA

Publications

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