Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name LOC100587000P7
Plot displaying the genomic locations of a retrocopy (in chr18) and its respective parental gene (in chr9). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr18:27993542-27994556  UCSC
Strand +
Parental Sequence XM_003257495.2
Parental seq. overlap 607 bp
Parental seq. overlap (%) 59.5%
Genomic Region Intergenic
Retrocopy Summary LOC100587000P7, located on chr18:27993542-27994556, is a retrocopy of the parental gene LOC100587000. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC100587000
Full Name N/A
Also known as LOC100587000
Coordinate chr9:82323047-82325363
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens H2AZP5
Chimpanzee Pan troglodytes H2AFZP3
Bonobo Pan paniscus LOC100974973P3
Gorilla Gorilla gorilla LOC101140733P2
Orangutan Pongo abelii H2AFZP4
Green monkey Chlorocebus sabaeus LOC103236032P7
Crab-eating macaque Macaca fascicularis LOC102130495P3
Rhesus Macaca mulatta H2AFZP3
Baboon Papio anubis LOC101021735P5
Golden snub-nosed monkey Rhinopithecus roxellana LOC104668848P4
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC100587000P7
TGATTAGCCCTTTCTCTGTCTTGCTTGTTTGAGCTTCAGCAGAATTCAAAACGACTGGCAATAAGGCTGGGAAGGACTCTGGAAAAAACAAGACAAAGGCGGTTTCCCACTTACAGAGAGCCGGCCTGCAGTTCCCAGTGGGACATATTCATCGACACCTGAGATCTAGGACGACCAGTCATAGGCATGTGGGTGCAACTGCCGCAGTGCATAGCATAGCCATCCCGGAGTAACTCACCATACAGCTACCTGCTCTGGCAGCAAAGGCATCAAAAGACTTCAAGGTAAAGCATATTACCCTTCGTCACTTGCAACTTGCTGTTTGTGGAGATGAAGAATTGGATTCTCTCATCAAGGCTACAATTGCTGGTGGTGGTGTCATTCCACACACTCACAGATCTCTGATGGGGAAGAAAGGACAACAGCAGGCTATCTAAAGGCTGCCTGGATTCTTTATTATCTCGAGACTCTAAGTACTCTACCAGCTGTCCAGCGTGGTGATTCCAGTGGGCTGTATCTCTGTGAAAAACACAATTTcatcgtGAGGTGATACAAAATTACTTAGAtacaattttgtctttttgtaattgTATCTAAGCAGGTTGGAAGTTTAATTAGCTTTCCAACCAACCAATTTCTGCATTCTAGTCTTAACCATACTGAAGTGTTACTATGGCTTCAAAAAAGCTATTGATTCCAAAGTAGTGGGTTTTGactgagtt
>XM_003257495.2
GTCTCAAGGACGCGTCCCGAGGGCGGGTGGCAGCCATTGGTGGGATGAGCAATCCGAGTTCCCGGATGAGGGAACATTCTGCAGTATAAAGGGAGCAAGGAAGGCGGGAGACAGCGCAGTTTGAATCGCGGTGCGACGAAGGAGTAGGTGGTGGGATCTCACCGTGGGTCCGATTAGCCTTTTCTCTGCCTTGCTTGCTTGAGCTTCAGCGGAATTCGAAATGGCTGGCGGTAAGGCTGGAAAGGACTCCGGAAAGGCCAAGACAAAGGCGGTTTCCCGCTCGCAGAGAGCCGGCTTGCAGTTCCCAGTGGGCCGTATTCATCGACACCTGAAATCTAGGACGACCAGTCATGGACGTGTGGGCGCGACTGCCGCTGTGTACAGCGCAGCCATCCTGGAGTACCTCACCGCAGAGGTACTTGAACTGGCAGGAAACGCATCAAAAGACTTAAAGGTAAAGCGTATTACCCCTCGTCACTTGCAACTTGCTATTCGTGGAGATGAAGAGTTGGATTCTCTCATCAAGGCTACAATTGCTGGTGGTGGTGTCATTCCACACATCCACAAATCTCTGATTGGGAAGAAAGGACAACAGAAGACTGTCTAAAGGATGCCTGGATTCCTTGTTATCTCAGGACTCTAAATACTCTAACAGCTGTCCAGTGTTGGTGATTCCAGTGGACTGTATCTCTGTGAAAAACACAATTTTGCCTTTTTGTAATTCTATTTGAGCAAGTTGGAAGTTTAATTAGCTTTCCAACCAACCAAATTTCTGCATTCGAGTCTTAACCATATTTAAGTGTTACTGTGGCTTCAAAGAAGCTATTGATTCTGAAGTAGTGGGTTTTGATTGAGttgactgtttttaaaaaactgtttggATTTTAATTGTGATGCAGAAGTTATAGTAACAAACATTTGGTTTTGTACAGACATTATTTCCACTCTGGTGGATAAGCTCAATAAAGGTCATATCCCAAACTA

Publications

PMID - Link Title