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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC100596299P4
Plot displaying the genomic locations of a retrocopy (in chr9) and its respective parental gene (in NW_022096452.1). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr9:11005710-11006452  UCSC
Strand -
Parental Sequence XM_003281697.4
Parental seq. overlap 690 bp
Parental seq. overlap (%) 83.7%
Genomic Region Intergenic
Retrocopy Summary LOC100596299P4, located on chr9:11005710-11006452, is a retrocopy of the parental gene LOC100596299. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC100596299
Full Name N/A
Also known as LOC100596299
Coordinate NW_022096452.1:23498-28396
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens CHCHD2P8
Chimpanzee Pan troglodytes CHCHD2P10
Bonobo Pan paniscus CHCHD2P11
Gorilla Gorilla gorilla CHCHD2P10
Orangutan Pongo abelii CHCHD2P10
Green monkey Chlorocebus sabaeus CHCHD2P2
Crab-eating macaque Macaca fascicularis CHCHD2P10
Rhesus Macaca mulatta CHCHD2P10
Baboon Papio anubis CHCHD2P11
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC100596299P4
AGGCCGAGCCATCGCGTACCTAGGATGCCGTGTGGAAGCCGAAGCTGCACCTCCCGCATGACCCCTCCAGCCAGCTGGGCCCCTCAGATGAGAGTTGCACCCAGGCCAGCACCAGCCGCTCAGCCACCAGCAGCGGCACCCCCATCTGCAGTTGGCTATCTTGCTGCTGCGCCCCGTCTGATGGCCCACATGGCAACCACTGCAGCTGGCGTGGCTGTGGGCTCTGCCGTGGGGCACACACTGGGTCATGCCATTACTGGGGGGTTTAGTGGAGGAAGTAATGCTGAGTCCACGAGGCCTGACATCACTTACCAGGAGCCTCAGGGAACCCAGCtggcacagcagcagcagctttgcTTCTATGAGATCAAATAGTTTTTGGAGTGTGCCCAGAACCATGGTGACATCAAGCTCTGTGAGGGTTTCAATGAGGTGCTGAAACAGTGCCAACTTGCAAAATGATTGGCCTAATCAAGAAGTTCAACCTGGAGAAATGGAAAATCAGCTCTATAACCAAGTTAGTTTAGTATAAAAATAGAATCGATAGTGAAGGTATAAAGTGTAACCATCAGTTAAATCTCTCGTGTCGTTCCTAGCTTCCTTGCTTCTGAATTGAAATGGAAGGGGGTGTTCCTACTCTGTAGAATTTGGGGCTGGGCAAATGTTTGTGTGGCCTCCTTAAAAGAGCtgttatgattttattctttgtgagTTAATTAGAATAAAGTCATTTTCTTccaagg
>XM_003281697.4
CAGCCCCGCCTCCCACCTTCCGGTCTTCTCAGAAGTCGCTTGGCTCTTCGCTGGTTGTCACCCGTCTGGAGGCCTAGCCGTCGCGTACCTAGGATGCCGCGTGGAAGCCGAAGCCGCACCTCCCGCATGGCCCCTCCGGCCAGccGGGCCCCTCAGATGAGAGCTACACCCAGGCCAGCACCAGTCGCTCAGCCACCAGCAGCGGCCCCATCTGCAGTTGGCTCTTCTGCTGCTGTGCCCCGGCAGCCTGGTCTGATGGCCCAAATGGCAACCACTGCAGCTGGCGTGGCTGTGGGCTCTGCTGTGGGGCACACATTGGGTCACGCTATTACTGGgggcttcagtggaggaagtaatgCTGAGCCTGCGAGACCTGACATCACTTACCAGGAGCCTCAGGGAACCCAgccagcacagcagcagcagccttgcTTCTATGAGATCAAACAGTTTCTGGAGTGTGCCCAGAACCAGGGTGACATCAAGCTCTGTGAGGGTTTCAATGAGGTGCTGAAACAGTGCCGACTTGCAAACGGATTGGCCTAATGAAGAAGTTCAACCTGGAGAGATGGAAAATCAGCTCTCATAACTAAGTTAATTtagtataaaaatagaattgataGTGAGGGTATAAAGTGTAACCATCAGTTAAACCTCTCCTGTCATTCCTAGCTTCCTTGCTTCAGAATTGAAATGGAATGGGGGGTGTCCCTACTCTGTAGAATCTGGGACTGGGCAAATGTTTGTGTGGCCTCCTTAAACTAGCtgttatgattttattctttgtgagTTAATTAGAATAAAGTCATTTTCTTCCAAGA

Publications

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