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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC100604897P1
Plot displaying the genomic locations of a retrocopy (in chr2) and its respective parental gene (in chr16). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr2:18455623-18456088  UCSC
Strand -
Parental Sequence XM_003268330.4
Parental seq. overlap 429 bp
Parental seq. overlap (%) 77.3%
Genomic Region Intragenic (CCNJL)
Retrocopy Summary LOC100604897P1, located on chr2:18455623-18456088, is a retrocopy of the parental gene LOC100604897. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC100604897
Full Name N/A
Also known as LOC100604897
Coordinate chr16:11849549-11854300
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens UQCRBP5
Chimpanzee Pan troglodytes UQCRBP2
Bonobo Pan paniscus LOC100985683P3
Gorilla Gorilla gorilla LOC101127528P2
Orangutan Pongo abelii UQCRBP3
Green monkey Chlorocebus sabaeus LOC103237165P3
Crab-eating macaque Macaca fascicularis LOC102117303P2
Rhesus Macaca mulatta LOC701223P1
Baboon Papio anubis LOC100997829P1
Golden snub-nosed monkey Rhinopithecus roxellana LOC104671564P1
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC100604897P1
ctggtCAAAATGGCTGGCAAGAAGGCTGTTGCAGCATCAGGCAAGTGGCTGCACGGTATTCGAAAATGGTATTACAAAGCCGCAGGATTCAATAAACTGGGGATAATGAGAGATGATACAATATATGAGAATGAAGATGTAAAAGAAGCCGTACGTAAGCAGCCTTCCTCAGAACCTTTATAATGACAGGATGTTTCACATGAAGAGGGCACTGGACCTGTCCATGAAGCATCAGATCTTGCCTAAAGAGCAGAGGACCAAATATGAAGAGGAAAATTTCTACCTTGAAATGTATCTGAAAGAGGTTATtcgggaaagaaaagaaagagaagaatgggCAAAGAGGTAATCATGTAGTTGAAGTCTGTGGATGCAGCTGTTACGAAAATGGTTAAACTTGAAAAAAACAATCTTAAGAATTATTTGGTCTGCAGatgttttactttaaataaatatctactgtaaa
>XM_003268330.4
TAACGCGCCTGCGGACTGGGCCCAGCGTGTCCTCTATGACTTACCCAGAAGGCAACGCTTCTTTTTCTGGTCAAAATGGCTGGCAAGCAGGCCGTTTCAGCATCAGGCAAGTGGCTGGATGGTATTCGAAAATGGTATTACAATGCTGCAGGATTCAATAAACTGGGGTTAATGCGAGATGATACAATATACGAGGATGAAGACGTAAAAGAAGCCATAAGAAGGCTTCCTGAGAACCTTTATAATGACAGGATGTTTCGCATTAAGAGGGCACTGGACCTGACCATGAAGCATCAGATCTTGCCTAAAGAGCAGTGGACCAAATATGAAGAGgAAAATTTCTACCTTGAACCGTATCTGAAAGAGGTTATtcgggaaagaaaagaaagagaagaatgggCAAAGAAGTAATCATGTAGTTGAAGTCTGTGGATGCAGCTGTTGTGAAGATGGTTAAACTTGAAACAAAccattttaagaattatttggTCTGCAGATGtttaactttaaataaatgtctattgtaaTGGCTGGAGTTTTTGAATTCCAAA

Publications

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