Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC115836307P1
Plot displaying the genomic locations of a retrocopy (in chr18) and its respective parental gene (in chr8). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr18:84231536-84233298  UCSC
Strand +
Parental Sequence XM_030816534.1
Parental seq. overlap 1651 bp
Parental seq. overlap (%) 79.7%
Genomic Region Intergenic
Retrocopy Summary LOC115836307P1, located on chr18:84231536-84233298, is a retrocopy of the parental gene LOC115836307. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC115836307
Full Name N/A
Also known as LOC115836307
Coordinate chr8:865670-897982
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens BIN2P2
Chimpanzee Pan troglodytes BIN2P2
Bonobo Pan paniscus BIN2P2
Gorilla Gorilla gorilla BIN2P2
Orangutan Pongo abelii BIN2P2
Green monkey Chlorocebus sabaeus BIN2P1
Crab-eating macaque Macaca fascicularis BIN2P1
Rhesus Macaca mulatta BIN2P1
Baboon Papio anubis BIN2P1
Golden snub-nosed monkey Rhinopithecus roxellana BIN2P2
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC115836307P1
CGCCCAGTTCAGTGAGATTAAGGAGAGAATTGACAAGCGGGGTTGAAAACTCGTGGATTATGACAGTGCCCAACATCACCTGGACGCAGTGCAGAATGCCAAGAAGAAAGATGAGGCCAAGACTGCCAAGGCAGAGGAAGAGTTCAACAAAGCCCAGACTGTGTTTGAAGATCTGAACCAAGAACTACTAGACCAGCTGCCTATTCTTTATAATAGTCATGTTGGCTGCTATGTGACCATCTTCCAAAACATTTCCAACTTGAGGGATGTCTTCTACAGGGAAATGAGCAAGCTGAACCACAATCTCTATGAGGTGATGAGCAAACTGGAGAAGCAACATTCCAATAAAGTCTTTGTGGTGAAGGGACTATCAAGCAGCAGCAGGCTCTCTTTAGTCATTTATCCCCCAGTTCAGACATCTATGGCCTCCAGTCCTCTTACCTCACCTACTAGTCCCCCTACACTTTCCTTGAAGAGTGAGAGTGAATCTGTCGCAACAACTGAAGATCTGGCGCCTGATGCAGCCCAGGGGGAAGATAATTCTGAGATCAAGGAGCCCTTagaagatgaggaaatagagaagGAAGGATCTGAAGCAAGCTCCTCTGAGGAAGAAGAGCCTCTACCAGCCTGCAATGGCCCTGCCCAGGCCCAGCCCTCTCCTACCATTGGGAGTGGCAAGTCCCAGGAGGAAGTTCTCCCTAGCTCCCCAGCTCCATCACCAGGCAGAACCCTGAGCCCTTCAGGGCGGCCTTCATCATCTGCCACAGAAGTAGTCCTCCGAACCTGCACCGCAAGTGAAGGATCTGAACAACCAAAGAAGAGAGCCTCTATCCAGAGGACCTCAGCACCTCCTAGTAGGCCTCCTCCACCCAGAGCCACTCCAAGCCCCAGGCTCTCCTCAGGGAACATAccctccagccctccagcctctGGAGGGGGTTCACCCACCAGCCCTATGGTCTCCTTGGGGACTGAGACGCCAAGTCCTAGGACCTCCCTAGAGGTCTCTCCTAATCCAGAACTACCAGAGAAGCTAGTAAGAACTCCTGaggtaaaaaaaatgaaaacatccacAATCAGAACCCCGAAGAACTTTGCACTTTTCCCACCTTAATGATATCTCAGATTGCTTCAGAGCCTGGAGAGGCAAAGAAGATGGAAGACAAGGAAGAGGATAATAAGCTTGTCTTAGCTGACCCCTCGGAGGGCCAAGACCAGCTTTAAGTCTCCACGGTACCAGACAAGAGCAACCTCACAGCACCTGAACCTCAAGAAGAGGTATCTACAAATGAAAATGCACAACTCTGAAGAGAAACTGCCAAGACTCCTCTCACCCCACACCTCCCTAAAGAAGCTTTTCAACCAGAGGGTATAGGTCAGAGGGATATAAGAGCCAGCAACCATCCCTGGGTTCTCAGTAGGAATGCTGGTGCTCTCTAAAGACCTGACATTAATGGAGGCAGAGTAGAAGCCTTatgggagagatggagggaggcagGCTGAAGAGAAGAGAACATTAGACTCAAGGAATATATAATTCAGGTTTTAGCATTATTAGAATAAGACTTTATACATTAAAGTGGAACTATAATCactataaaaagcaaaagcatcTATAGATAGACACTTGTCTATACAGAAACATAATCACACATACTCAGAGATAGTGAACAAATCTGTCTTTGACTTACAACCCGTTTTGCAAGACTTAAAGCCAGAAGAACACATTTTCAGATTGCTAAATAAAGTCtgactctgac
>XM_030816534.1
CAGAAATTGGGGAAAGCTGTAGAAACCAAAGATGAACGATTTGAACAAAGTGCTAACAACTTCTACCAACAACAGGCAGAAGGCCACAAGCTGTACAAGGACCTGAAGAACTTCCTTAGTGCAGTCAAAGTGATGCATGAAAGTTCAAAAAGAGTGTCAGAAACCCTGCAGGAGATCTACAGCAGCGAGTGGGACGGTCATGAGGAGCTGAAGGCCATCGTAGGGAATAATGATCTCCTTTGGGAAGACTATGAGGAGAAACTGGCTGACCAGGCTGTGAGGACCATGGAAAACTACGTTGCCCAGTTCAGCGAAATTAAGGAGAGAATTGCCAAGCGGGGTCGGAAACTCGTGGACTATGACAGTGCCCGACATCACCTGGAGGCAGTGCAGAATGCCAAGAAGAAAGATGAGGCCAAGACTGCcaagGCAGAGGAAGAGTTCAACAAAGCCCAGACTGTGTTTGAAGATCTGAACCAAGAACTACTAGAGGAGCTGCCTATTCTTTATAATAGTCGTATTGGCTGCTATGTGACCATCTTCCAAAACATTTCCAACTTGAGGGATGTCTTCTACAGGGAAATGAGCAAGCTGAACCACAATCTCTACGAGGTGATGAGCAAACTGGAGAAGCAACATTCCAATAAAGTCTTTGTGGTGAAGGGACTGTCAAGCAGCAGGCGCTCTTTAGTCATTTCTCCCCCAGTTCGAACAGCTACGGTCTCCAGTCCTCTTACCTCACCTACTAGTCCCTCTACACTTTCCTTGAAGAGTGAGAGTGAATCTGTCTCCGCAACTGAAGATCTGGCACCTGATGTAGCCCAGGGGGAAGACAATTCTGAGATCAAGGAGCTCTtagaagaggaggaaatagaGAAGGAAGGATCTGAAGCAAGTTCCTCTGAGGAAGATGAGCCTCTACCAGCCTGCAATGGCCCCGCCCAGGCCCAGCCCTCTCCTACCACTGAGAGTGCCAAGTCCCAGGAGGAAGTTCTCCCCAGCTCCCCAGCTCCATCACCAGGCGGAGCCCTGAGCCCTTCAGGGCAGCCTTCATCATCTGCCACAGAAGTAGTCCTCCGAACCCGCACAGCAAGTGAAGGATCTGAACAACCAAAGAAGAGAGCCTCTATCCAGAGGACCTCAGCACCCCCTAGTAGGCCTCCTCCACCCAGAGCCACTGCAAGCCCCAGGCCCTCCTCAGGGAACATACCTTCCAGCCCTACAGCCTCTGGAGGGGGTTCACCCACCAGCCCTAGGGCCTCCTTGGGGACTGGGACTCCAAGTCCTAGGACCTCCCTAGAGGTCTCTCCTAATCCAGAACCACCAGAGAAGCCAGTAAGAACTCCTGaggccaaaggaaatgaaaacatccaCAATCAGAACCCCGAAGAACTTTGTACTTCCCCCACCTTAATGACATCTCAGattgcttcagagCCTGGAGAGGCAAAGAAGATGGAAGACAAGGAAGAGGATAATAAGCTTATCTCAGCTGACTCCTCGGAGGGCCAAGACCAGCTTCAAGTCTCCACGGTACCAGAAAACAACAACCTCACAGCACCTGAACCTCAAGAAGAGGTATCTACAAGTGAAAATCCACAACTCTGAAGAGAAACTGCCAAGactccccctgccccacacctCCCCAGAGAAGCTCTTCAACCAGAGGGTATAGGTCGGAGGGATATAAGAGCCAGCATCCATCCCTGGGTTCTCAGTAAGAATGCTGGCGCTGTCTAAAGACTTGGCATTAATGGAGGCGGAGGGGCAGCCTtatgggagggatggagggaggcagGCTGGGGAGAAGAGAACATTAGACTCAGGGAATATTTAATTCTGGTTTTAGCATTATTAGAATAAGACTTTATACATTAACTAAAGTGGAGCTTTAATCACTATAAAAAGCAAAAGTATCTATAGACACAGACACTTGTCTATACAGAGACATAACCACACACACTCAGAGGATAGTGAACAAATCTGTCTTTGACTTATGACCTATTTTGCAAGACTTAAAGCCAGAAGAATGCATTTTCAGATTGTTAAATAAAGTCTGATTCTGACTA

Publications

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