Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name MED28P6
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr20). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chrX:45515003-45516114  UCSC
Strand +
Parental Sequence XM_012499711.2
Parental seq. overlap 941 bp
Parental seq. overlap (%) 52.6%
Genomic Region Intergenic
Retrocopy Summary MED28P6, located on chrX:45515003-45516114, is a retrocopy of the parental gene MED28. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name MED28
Full Name N/A
Also known as MED28
Coordinate chr20:67551104-67561519
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens MED28P4
Chimpanzee Pan troglodytes MED28P6
Bonobo Pan paniscus MED28P6
Gorilla Gorilla gorilla MED28P6
Orangutan Pongo abelii MED28P7
Green monkey Chlorocebus sabaeus MED28P7
Crab-eating macaque Macaca fascicularis RPL36ALP5
Rhesus Macaca mulatta RPL36ALP5
Baboon Papio anubis RPL36ALP7
Golden snub-nosed monkey Rhinopithecus roxellana MED28P2
Marmoset Callithrix jacchus MED28P9
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>MED28P6
TAGTACTTTGGTGGATGACTTGGAGTCATCTTTCAAGGCTTAATTTGTTTCTCTGATAAGTCAGGACTATGTCAATGGCACTGATCAGGAAGAAATTCGAACTGGTGTTAATTAGTGTATCCAGAAGTTTCTGGATACTGCAAAAGAGAcaatgtttcctaaaaaaaGATTGCAATTATCTGTCCAGAAACCAGAGCAAGTTATCAAAGAGGATATCTCAGAACTATGGAATAAATTACAGCATTAAGATGCACTGGTCCAGAAGCATTTGACAAAGCTGAGGCATTGGCAGCAGGTGCTAAAGGACATCAACATGCAGCACAAAAAGCCAGCCGACATCCCTCAGGGCTCTTTGGCCTACTTTGAGCAGGCATCTGCCAATATCCCTCCACCTCTGAAGTCAACCTGAGCAAAGGGCAAAGGCTGTCAGCCTGAGAGAGGGCTGGTGTGCAAGGTTTGCCACACATCCCTTCTTGTGGACTTGGCATTTGGGAAGAAGTCTTTGCCACAGAAGGAGTTGATGTTAGTTTTCTGCTCCCACCAAAAATTTTTCCACTGTTGTTACAAGCTGTTAATTTCTTGAGCACTCTATAAAATGTCTATAGCTTGGGTAAACcaagtaaattctttttttgtctaGCAAAGTTTAGAGTGTTAGTGTGATGATACCGattcatttttatggttgttgtgcttgtttttaaatttttgtatgacttatcatcttttcatgtgtgtttCCCATTGTTTGTTTGATCTGACGGAAAAATTATAATAGCCTGAGAATCAGAGGATGAGGATTTTTGTTGTAGGCCTCTTATGATTGTTACCCTTCAGTGGCAGtgtagaaaaatatgtaaatttgctCTGTTTCAAGACTTCAAACTACCTCAAGAAGAGGAAGCTaatgcaaaaatatttgtaatgctTCCAGAGCTCTCAAAATGAGGATTTTTTTGTAAATAGGtcagaaaaagattaaaatatccTGGGTTAGTGTAGTAATATTACAGTAGGAACCTTAGGTTGATGCTGACTTTTATTTGGCATAAGTTTATATTTTGTAtgctgtttatttactttttt
>XM_012499711.2
CTCTCTTGCGCCACTCCAGACATGGCGGCTCCACTAGGGGGTATGTTTTCTGGGCAGCCACCCGGGCCCCCTCAGGCCCCGCCGGGCCTTCCGGGCCAAGCTTCGCTTCTTCAGGCAGCTCCAGGCGCTCCTAGACCTTCCAGCAGTACTTTGGTGGACGAATTGGAGTCATCTTTCGAGGCTTGCTTTGCGTCTCTGGTGAGTCAGGACTATGTCAATGGCACCGATCAGGAAGAAATTCGAACCGgtgttgATCAGTGTATCCAGAAGTTTCTGGATATTGCAAGACAGACAGAAtgttttttcttacaaaaaagaTTGCAGTTATCTGTCCAGAAACCAGAGCAAGTTATCAAAGAGGATGTGTCAGAACTAAGGAATGAATTACAGCGGAAAGATGCACTAGTCCAGAAGCACTTGACAAAGCTGAGGCATTGGCAGCAGGTGCTGGAGGACATCAACGTGCAGCACAAAAAGCCCGCCGACATCCCTCAGGGCTCCTTGGCCTACCTGGAGCAGGCATCTGCCAACATCCCTGCACCTCTGAAGCCAACGTGAGCAAAGGGCAGAGGCAGTTGGCCTATAAGTGGGCTGGTGCGTGGGGTTGGCCACACATCCCTTCCCGTGGACTTGACATTTTGGAAGAACTCTTTGCCAGATAATGAGTTCATTTTAGTTTTATGCTTCCATTGAAAAATTTTCCACTATTTTTATAAGCTGTTCATTTCTTGAGTACTTTATAACATGTCTGTAGCTTGGATAAaccaagtaaatatttttttttttatctttagccAAGTTTAGACTGTGAATATGATGACACAGATTCTTTTTTATGGTggctttgcttgtttttaaatttttgcatgacttttcatctttttatgtgtgtttccTGTAGTTTGATCCGAAGGAAAAGAGTATAGTAGCCTGAGAATCAGGAGATGGGAATTTTAGTTGTAGGCCTTATGATAATTACTCCTCAGTGGTGCGTAGAAAAGTATGTAAATTTGCTCTGTTTTAAGACTTTGAACTACCTCAAGAAGAGGAATCTAATACAATATTTGTAATGTTTCCAGAGCTCTCAgaatgaggattttttttgtaaataggtTGGAAGAGGATGGAACTATCCTGGGTTAGTGTAGTAATCTTACAGTAGGATCCTTAGGTTGATGCTGACTTCTATTTGGggtatgtttatattttatgtagtgtttgtttacttttttttttgacagaagaTACAGTGGGAGCAGTGATACGCTAACATTCATTACATTCTGCAGTATCGAGTCTGTTTAATGGGGCAGATGCTGTTTTCAGTAGCATAACAGTGGGGGCATAGGTGATCTATGAGGGGCTAAATCTTGCTCTGactgtctctttttgttttgagttttgtttgcgtgtatcatttttgttttacattttgggAGGGGAAACATTTTCCATTAAGGAAGGTTGTTGCCAGTGGATTTGACTCCAAGGGACTAGAGTgttgtggtgggggtggggaggggctgcaggGTGATCGTTGGCTACTGAGCCTCCACAAAGAGCATGTGGCGCCCCGCCTTTGCTCTTTGTGGAGCAAAGATATTTTGCTCTGGTTAGTTTTGTAGGCAGCCTCAGATTCCCTGTTGAGTTGCTGTTAAGAAATGGAGACTTCTGGCTCTCATTGGGTAAGGTTTTCTGAGTTTTATGATCTCTTACTAGATCACATCCATTTACCCAGAACAAATGCTTCACTGTCTTCTGACTGGCAGTACTCCTGTG

Publications

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