Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name METTL5P4
Plot displaying the genomic locations of a retrocopy (in chr22a) and its respective parental gene (in chr22a). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr22a:30733585-30734240  UCSC
Strand -
Parental Sequence XM_003254237.3
Parental seq. overlap 589 bp
Parental seq. overlap (%) 73.2%
Genomic Region Intergenic
Retrocopy Summary METTL5P4, located on chr22a:30733585-30734240, is a retrocopy of the parental gene METTL5. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name METTL5
Full Name N/A
Also known as METTL5
Coordinate chr22a:70097951-70111320
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens METTL5P4
Chimpanzee Pan troglodytes METTL5P4
Bonobo Pan paniscus METTL5P4
Gorilla Gorilla gorilla METTL5P4
Orangutan Pongo abelii METTL5P4
Green monkey Chlorocebus sabaeus METTL5P4
Crab-eating macaque Macaca fascicularis METTL5P3
Rhesus Macaca mulatta METTL5P3
Baboon Papio anubis METTL5P3
Golden snub-nosed monkey Rhinopithecus roxellana METTL5P5
Marmoset Callithrix jacchus METTL5P4
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>METTL5P4
CTTCTGGCCCCGGCCAAGGTGCCGGTCGCCTCCTGAGATCCTGTGCCTTCAAACCCTGAgagtccatatttttaaaaaaacaaaatgaaggaatTAAGGCTTAAGGAACTAGAGAGTCACCTGAAATAATTGGATGGATTCTAAAAGGCCAAGCTACTTCTAGAACAGTATCCCACCAAGCTTCACATTGCAGCATGTATGCTCTATGCAATCCATAACACTTATGATGACATTGAAAGTGAAGTTTTTGCAGATCTAGGCTGTAGTTGTGGAATGCTTAGCATCAGAACTGCAGTGTTAGGAGCAGGGTTGTGTGTTGGATTTGACAGAGATGAAGATGTATTGGAAATATTTAATAGGAATGTGGAAGAGTTTGAGTTAACAAATATTGACATGGTTCAATGTGATGTGTGCCTGTTATTTAACAGGATGTCAAGTCATTTGATACAGTAATTATGAATCCGCCTTTTGGgaccaaaaataataaagggaTAAATATGGTTTTTCTAAAGACTGCTTTGGAAATGGCAAGAACAGCAGTATATTCTTTACACAAATCCTCCAAGAACATGTTGAAAAGAGAGCTGCAGAATGGGAAATCAAGATAGATATGATTTCAGAGCTTCAGGATGACCTGCCAGTAtcatacaagt
>XM_003254237.3
GAACGCGTACGCGCGTGCGGCCTGGCGCTTCCGGCCCCGGCCGAGGTGCGGGTCGCCTCCAGAGATCCTGTGCCTTCAAACCCTACGAGTccatactttaaaacaaaatgaagaaaataaggctTAAGGAACTAGAGAGTCGCCTGCAACAAGTGGATGGATTCGAAAAGCCCAAGCTACTTCTAGAACAATATCCTACCAGGCCGCACATTGCAGcatgTATGCTCTATACAATCCATAACACTTATGATGACATTGAAAATAAAGTCGTTGCAGATCTAGGATGTGGTTGTGGAGTACTTAGCATCGGAACTGCAATGTTAGGAGCAGGGTTGTGTGTTGGATTTGACATAGATGAAGACGCATTGGAAATATTTAATAGGAATGCAGAAGAGTTTGAGTTAACAAATATTGACATGGTTCAATGTGATGTGTGCTTATTATCTAACAGAATGTCTAAGTCATTCGATACAGTAATTATGAATCCTCCCTTTGGGACCAAAAATAACAAAGGGACAGATATGGCTTTTCTAAAGACTGCTTTGGAAATGGCAAGAACAGCAGTGTATTCCTTACACAAATCCTCAACTAGAGAACATGTTCAAAAGAAAGCTGCAGAATGGAAAATCAAGATAGATATTATAGCAGAGCTTCGATATGACCTGCCAGCATCATACAAGtttcataaaaagaaatcaGTGGACATTGAAGTGGACCTAATTcggttttccttttaaaagcccCCACAAACAAAAGTAGTTTAAAacctatttaaaatgaataaaaaattggTTTACTAAA

Publications

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