Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name NPM1P15
Plot displaying the genomic locations of a retrocopy (in chr9) and its respective parental gene (in chr2). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr9:64859846-64860727  UCSC
Strand -
Parental Sequence XM_003273233.2
Parental seq. overlap 705 bp
Parental seq. overlap (%) 46.8%
Genomic Region Intragenic (RASGEF1B)
Retrocopy Summary NPM1P15, located on chr9:64859846-64860727, is a retrocopy of the parental gene NPM1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name NPM1
Full Name N/A
Also known as NPM1
Coordinate chr2:7255813-7276136
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens NPM1P41
Chimpanzee Pan troglodytes NPM1P11
Bonobo Pan paniscus NPM1P10
Gorilla Gorilla gorilla NPM1P10
Orangutan Pongo abelii NPM1P10
Green monkey Chlorocebus sabaeus NPM1P8
Crab-eating macaque Macaca fascicularis NPM1P16
Rhesus Macaca mulatta NPM1P16
Baboon Papio anubis NPM1P7
Golden snub-nosed monkey Rhinopithecus roxellana NPM1P6
Marmoset Callithrix jacchus NPM1P2
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>NPM1P15
tcccTTGAAGGCTTTGAAATAACACTTGTGGTCTTCTGGTTGAAGTGTAGTTCAGGGCCAGTGCATATTAGTGGACAGTGCTTAGTAACTATGGataTGAAACTTTTAAGTATATCTAGAAGGCAGTCCACCTGTGGAGATGATAGAAAGTTTCCacagagaaaagtaaaactaaactgaagaaaaagcTGTAGGGAATAAATCTGTCTGAGATACTTCTGCCAAAAATCAAACCAGAATGGAAAAAGACTAAAAATCATTAACAAGAAGATCTAAAAGTAAAGAATTCttcaaaaaaacaggaaaaacaccCTGAAAACACCAAAAGGACCTAGTTCTGTAGAAGACATCAAAGCCAAAATGCAAGCAAGTATAGGAAAAGTTGGTTCTCTTCCCAAAGTGGGAGCCCAATTCATCAGTTATGCAAATAATTGCTTCTGGATGAATAAACAGGAGGCTATTCAAGATCTCTGGCAGTGGAGAAAGTCTCCTTAAGAAAATAGTTTAAACAGTTTGTTAAAAATTTCCCATCTTATTTCATTTCTATAACAGTTGATATCTAGATGTCTGATAACACAGAGTGAGAACTTTCCCTACCGTCTTTGATAAATGTACAGGCTCCACTGCTAAGAATGTGTTTTCCAAAATGCCTATTTGGTTTTTAAAGATGGATCTCCACCCTCTGCCTGGTTTTAAGTATGTATGAAATGTGTGCTAGGATATAGTAGTTGCAGTGGCCAGACATGGAAATGGCGGGGAGACAAAAATGTACATGTGAAATAAACTCAatgttttaataaagtaa
>XM_003273233.2
CGTGCTCGGTGGGAGCCCGCGGAGTACCTGGAAGGAGGTGGGGGGGCGAGGTAGAAAGGAGTAGGGTTGAAAAGCGCTTGCGCAGGAGGCTACGGTACGGGGGTGGGAGGGCTTCGGCGCACGCGCGCGGAGGCGGGACTTGGGAAGCGCTCGCGAGATCTTCAGGGGCTATATATAAGCGCGGGGAGCCTGCGTCCTTTCCCTGGTGTGATTCCGTCCTGCGCGGCTGTTATTTGGAGCAGCGTTCGTTTATCTCCGTCCGCCTTCTCTCCTACCTAAGTGCGTGCCGCCACCCGATGGAAGATTCGATGGACATGGACATGAGCCCCCTGAGGCCCCAGAACTATCTTTTCGGTTGTGAACTAAAGGCCGACAAAGATTATCACTTTAAGGTGGATAATGATGAAAATGAGCACCAGTTATCTTTAAGAACGGTCAGTTTAGGGGCTGGTGCAAAGGATGAGTTGCACATTGTTGAAGCGGAGGCAATGAATTACGAAGGCAGTCCAATTAAAGTAACACTGGCAACTTTGAAAATGTCTGTACAGCCAACGGTTTCCCTTGGGGGCTTTGAAATAACACCACCAGTGGTCTTAAGGTTGAAGTGTGGTTCAGGGCCAGTGCATATTAGTGGACAGCACTTAGTAgCTGTCGAGGAGGATGCAGAGtcagaagatgaagaggaggaggatgtgaAACTCTTAAGTATATCTGGAAAGCGGTCTGCCCCTGGAGGTGGTAGCAAGGTTCCACAGaaaaaagtaaaacttgctgctgatgaagatgatgatgatgatgatgaagatgatgatgatgaagatgatgatgatgatgattttgatgatgaggaagctgaagaaaaAGCGCCAGTGAAGAAATCTATACGAGATACTCCAGCCAAAAATGCACAAAAGTCAAATCAGAATGGAAAAGACTCAAAACCATCATCAACACCAAGATCAAAAggaCAAGAATCcttcaaaaaacaggaaaaaactcctaaaacaccaaaaggaccGAGTTCTGTAGAAGACATTAAAGCAAAAATGCAAGCAAGTATAGAAAAAGGTGGTTCTCTTCCCAAAGTGGAAGCCAAGTTCATCAATTATGTGAAGAATTGCTTCCGGATGACTGACCAAGAGgctatTCAAGATCTCTGGCAGTGGAGGAAGTCTCtttaagaaaatagtttaaacaatttgttaaaaattttccgtcttatttcatttctgtaaCAGTTGATATCTGGCTGTCCTTTTTATAATGCAGAGTGAGAACTTTCCCTACCGTGTTTGATAAATGTTGTCCAGGTTCTATTGCCAAGAATGTGTTGTCCAAAATgcctgtttagtttttaaagatggaaCTCCACCCTTTGCTTGGTTTTAAGTATGTATGGAATGTTATGATAGGACATAGTAGTAGCGGTGGTCAGACATGGAAATGGTGGGGAGacaaaaatatacatgtgaaataaaactcagtattttaataaagta

Publications

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