Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name PABPC1P2
Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chr16). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr5:58666183-58668637  UCSC
Strand -
Parental Sequence XM_030795384.1
Parental seq. overlap 2233 bp
Parental seq. overlap (%) 78.1%
Genomic Region Intergenic
Retrocopy Summary PABPC1P2, located on chr5:58666183-58668637, is a retrocopy of the parental gene PABPC1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PABPC1
Full Name N/A
Also known as PABPC1
Coordinate chr16:52858021-52876079
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens PABPC1P16
Chimpanzee Pan troglodytes PABPC1P7
Bonobo Pan paniscus PABPC1P8
Gorilla Gorilla gorilla PABPC1P7
Orangutan Pongo abelii PABPC1P8
Green monkey Chlorocebus sabaeus PABPC1P1
Crab-eating macaque Macaca fascicularis PABPC1P7
Rhesus Macaca mulatta PABPC1P7
Baboon Papio anubis PABPC1P6
Golden snub-nosed monkey Rhinopithecus roxellana PABPC1P7
Marmoset Callithrix jacchus PABPC1P2
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PABPC1P2
CTCTTTTACAAAATAACCCGGTGAAGCAGTTGAGCCTGAGCCTCCCGCCAGCGGCCCCGCAGCAGCTCCAAGAAGGAACCAAGAGACCAAGGCCTTCCCGCTGCCCGGACCCCGCACCGCCACCCTGGCTCCCCGTCGGCAGCCGGCAGCAAGTGGCAGCGGATCGACCACGTTCTGTGGCGGTTGAGTACGTTTCGATTTCGGGTGATTTTTGTCCCTCTGCGCTTGCTACTCCTCCAACGGAAAGGTCGCGGCCTGTGTCCCTGCGGGCAGCCGTGCCGAGAATGAACCCCAGCACCCCCAGCTACCCAACGGCCTCGCTCTACGTGGGGGACCTCCACCCCGACGTGACTGAGGCGATGCTCTACGAGAAGTTCAGCCGGGCGGGGCCCATCCTCTCCATCCGGGTTTGCAGGGACGTGATCACCCCCCACTCCTCCAACTACGCCTATGTGAACTTCCAGCACCCGAAGGACGCGGAGCATGCTCTGGACACCATGAATTTTGATGTTATAAAGGGCAAGCCATTACGCATCATGTGGTCTCAGCGTGATCCATCACTTCGCAAAAGTGGAGTGGGCAACATATTCGTTAAAAATCTGGATAAATCCATTAATAATAAAGCGCTGTATGATACAGTTTCTGCTTTTGGTAACGTCCTTTCATGTAAGGTGGTTTGTGATGAAAATGGTTCCAAGGGTTATGGATTTGTACACTTTGAGACACGTGAAGCAGCTGAAAGAGCTattgaaaaaatgaatggaattcCCCTAAATGATCGCAAAGTATTTGTTGGACGATTTAAGTCTCGTAAAGAACGAGAAGCTGAACTTGGAGCTAGGGCAAAAGAGTTCCCCAATGTTTACATCAAGAATTTTGGAGAAGACATGGACGATGAGCGCCTTAAGGATCTGTTTGGCAAGTTCGGGCCCACCTTAAGTGTGAAAGTGATGACTGATCAAAGTGGAAAATCCAAAGGATTTGGATTTGTAAGCTTTGAAAAGCATGAAGATGCACAGAAAGCTGTAGATGAGATGAATGGAAAGGAGCTCAATGGAAAACAAATTTACGTTGGTCGAGCTCAGAAAAAAGTGGAACGGCAGACGGAACTTAAGTGCAAATTTGAACAGATGAAGCAAGATAGGATCACCAGATACCAGGTTGTTAATCTTTATGTGAAAAATCTTGATGATGCTATTGATGATGAACGTCTCCGGAAAGCGTTTTCTCCATTTGGTACAATCACTAGTGCAAAGGTTATGATGGAAGGTGGTCGCAGCAAAGGATTTGGTTTCGTATGTTTCTCCTCCCCAGAAGAAGCCACTAAAGCAGTTACAGAAATGAACGGTAGAATTGTGGCCACAAAGCCATTGTATGTAGCTTTAGCTCAGCGCAAAGAAGAGCGCCAGGCTTACCTCACTAACGAGTATATGCAGAGAAAGGCAAGTGTACCAGCTGTGCCCAACCCTGTAATCAACCCCTACCAGCCAGCACCTCCTTCAGGTTACTTCATGGCAGCTGTCCCACAGACTCAGAACCATGCTGCCTACTATCCTCCTAGCCAAACTGCTCAACTAAGACCAAGTCCTTGCTGGACTGCTCAGGGTGCCAGACCTCATCCATTCCAAAATAAGCCCGGTGCTATCCGCCCAGCTGCTCCTAGAGTACCATTTAATACTATGAGACCAGCTTCTTCACAGGTTCCACGAGTCATGTCACCGCAGCGTGTTGCTAACAAATCAACAAAGACAGTGGGTCCACgtcCACACGGTCCCACGGTATAAATATGCTGCGGGAGTTCGCAATCCTCAGCAACATCTTAATGCACAGCCACAAGTTAAAATGCAACAGCCTGCTGTTCATGTACAAGGTCAGGAAACTTTGACTGCCGCCATGTTGGCATCTGCCCCTCCTAAAGAGCAAAAGCAAATGTTGGGTGAACGGCTCTTTCCTCTTATACAAGCCATGCACCCTACTCTTGCTGGTAAAATCACTGGCATGTTGTTGGAGACGGATAATTCAGAACTTCTTCATATGCTCGAGTCTCCAGAGTCACTCTGTTCTAAGGTTGATGAAGCTGTAGTCGTACTACAGGCCCACCAAGCTAAAGAGGCTGCCCAGAAAGCAGTTAACAGTGCCACCGGTGTTCCAACTGTTTACAATTGATCAGAGACCACTAAAAGAAATTTGTGCTTCACCGAAGAAAAACATGTAAACATCGAGAAACTTAAATACTatgggaaaaaaattgcaaaatctaaaataaataaaaaatggaaaggaaacttTGAACCTTATGTACCGAGCAAATGCCAGGTCTAGCAAATATAATGCTAGTCCTAGATTActtattgatttaaaaacaaaaaaaa
>XM_030795384.1
CCCCTTCTCCCCGGCGGTTAGTGCTGAGAGTGCGGAGTGTGTGCTCCGGGCTCggaacacacatttattattaaaaaatccaaaaaaaatctaaaaaaatcttttaaaaaaccccaaaaaaatttacaaaaaatccGCGTCTCCCCCGCcggagacttttattttttttcttcctcttttataaaataacCCGGTGAAGCAGCCGAGACCGACCTGCCCGCCCGCGGCCCCGCAGCAGCTCCAAGAAGGAACCAAGAGACCGAGGCCTTCCCGCTGCCCGGACCCGACACCGCCACCCTTGCTCCCCGCCGGCAGCCGGCAGCCAGCGGCAGTGGATCGACCCCGTTCTGCGGCCGTTGAGTAGTTTTCAATTCCGGTTGATTTTTGTCCCTCTGCGCTTGCTCCCGCTCCCCTCCCCCCGGCTCCGGCCCCCATCCCCGGCACTCGCTCTCCTCTCACGGAAAGGTCGCGGCCTGTGGCCCCGCGGGCAGCCGTGCCGAGATGAACCCCAGCGCCCCCAGCTACCCCATGGCCTCGCTCTACGTGGGGGACCTCCACCCCGACGTGACCGAGGCGATGCTCTACGAGAAGTTCAGCCCGGCCGGGCCCATCCTCTCCATCCGGGTCTGCAGGGACATGATCACCCGCCGCTCCTTGGGCTACGCGTATGTGAACTTCCAGCAGCCGGCGGACGCGGAGCGTGCTTTGGACACCATGAATTTTGATGTTATAAAGGGCAAACCAGTACGCATCATGTGGTCTCAGCGTGATCCATCACTTCGCAAAAGTGGAGTAGGCAACATATTCATTAAAAATCTGGACAAATCCATTGATAATAAAGCACTGTATGATACATTTTCTGCTTTTGGTAACATCCTTTCATGTAAGGTGGTTTGTGATGAAAATGGTTCCAAGGGCTATGGATTTGTACACTTTGAGACGCAGGAAGCAGCTGAAAGAGCTattgaaaaaatgaatggaatgctcCTAAATGATCGCAAAGTATTTGTTGGACGATTTAAGTCTCGTAAAGAACGAGAAGCTGAACTTGGAGCCAGGGCAAAAGAATTCACTAATGTTTACATCAAGAATTTTGGAGAAGACATGGATGATGAGCGCCTTAAGGATCTCTTTGGCAAGTTTGggcCTGCCTTAAGTGTGAAAGTAATGACTGATGAAAGTGGAAAATCCAAAGGATTTGGATTTGTAAGCTTTGAAAGGCATGAAGATGCACAGAAAgCTGTGGATGAGATGAACGGAAAGGAGCTCAATGGAAAACAAATTTATGTTGGTCGAGCTCAGAAAAAGGTGGAACGGCAGACGGAACTTAAGCGCAAATTTGAACAGATGAAGCAAGATAGGATCACCAGATACCAGggTGTTAATCTTTATGTGAAAAATCTTGATGATGGTATTGATGATGAACGTCTCCGGAAAGAGTTTTCTCCATTTGGTACAATCACTAGTGCAAAGgttATGATGGAGGGTGGTCGCAGCAAAGGGTTTGGTTTTGTATGTTTCTCCTCCCCAGAAGAAGCCACTAAAGCAGTTACAGAAATGAACGGTAGAATTGTGGCCACAAAGCCATTGTATGTAGCTTTAGCTCAGCGCAAAGAAGAGCGCCAGGCTCACCTCACTAACCAGTATATGCAGAGAATGGCAAGTGTACGAGCTGTGCCCAACCCTGTAATCAACCCCTACCAGCCAGCACCTCCTTCAGGTTACTTCATGGCAGCTATCCCACAGACTCAGAACCGTGCTGCATACTATCCTCCTAGCCAAATTGCTCAACTAAGACCAAGTCCTCGCTGGACTGCTCAGGGTGCCAGACCTCATCCATTCCAAAATATGCCCGGTGCTATCCGCCCAGCTGCTCCTAGACCACCATTTAGTACTATGAGACCAGCTTCTTCACAGGTTCCACGAGTCATGTCAACACAGCGTGTTGcTAACACATCAACACAGACAATGGGTCCACgtcctgcagctgcagctgctgcagctACTCCTGCTGTCCGCACCGTTCCACAGTATAAGTATGCTGCAGGAGTTCGCAATCCTCAGCAACATCTTAATGCACAGCCACAAGTTACAATGCAACAGCCTGCTGTTCATGTACAAGGTCAGGAACCTTTGACTGCTTCCATGTTGGCATCTGCCCCTCCTCAAGAGCAAAAGCAAATGTTGGGTGAACGGCTGTTTCCTCTTATTCAAGCCATGCACCCTACTCTTGCTGGTAAAATCACTGGCATGTTGTTGGAGATTGATAATTCAGAACTTCTTCATATGCTCGAGTCTCCAGAGTCACTCCGTTCTAAGGTTGATGAAGCTGTAGCTGTACTACAAGCCCACCAAGCTAAAGAGGCTGCCCAGAAAGCAGTTAACAGTGCCACTGGTGTTCCAACCGTTTAAAATTGATCAGGGACCACGAAAAGAAACTTGTGCTTCACCgaagaaaaatatctaaacatcgaaaaacttaaatattatggaaaaaaaacattgcaaaatataaaataaataaaaaaaggaaaggaaactttgAACCTTATGTACCGAGCAAATGCCAGGTCTAGCAAACATAATGCTAGTCCTAGATTActtattgatttaaaaacaaaaaaaccacaaaaaaatagtaaaatataaaaacaaattaatgttttatagacCCTgggaaaaagaattttcagcaaagtacaaaaatttaaagcattcctttctttaattttgtaattctttACTGTGGAATAGCTCAAAATGTCAGTTCTGTTTTAAGTAACAGAATTGATAACTGAGCAAGGAAACGTAATTTGGATTATAAAATTCTTGCTTTAATAAAAATTCCTTAAACAGTG

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