Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name PDCL3P4
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Plot displaying the genomic locations of a retrocopy (in chr9) and its respective parental gene (in chr14). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr9:34293034-34294204  UCSC
Strand +
Parental Sequence XM_003274853.4
Parental seq. overlap 825 bp
Parental seq. overlap (%) 76.7%
Genomic Region Intragenic (ZFYVE9)
Retrocopy Summary PDCL3P4, located on chr9:34293034-34294204, is a retrocopy of the parental gene PDCL3. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PDCL3
Full Name N/A
Also known as PDCL3
Coordinate chr14:83225952-83239406
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes PDCL3P1
Gorilla Gorilla gorilla PDCL3P1
Orangutan Pongo abelii PDCL3P1
Green monkey Chlorocebus sabaeus PDCL3P8
Crab-eating macaque Macaca fascicularis PDCL3P1
Rhesus Macaca mulatta PDCL3P1
Baboon Papio anubis PDCL3P1
Golden snub-nosed monkey Rhinopithecus roxellana PDCL3P5
Marmoset Callithrix jacchus PDCL3P1
Human Homo sapiens Without Homology
Bonobo Pan paniscus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

This retrocopy transcript is not present in the database for expression quantification

Related Sequence

>PDCL3P4
GGGGCACAGCTGGCTTGAGCAATTGGAAACAAGATGCGGGACCCCAACGCAGACACTGAATGGAATGATATCTTACACAAAAAGGGCATCTTAAAGTCTGAAAGAATtggaagaggaggcagaagaggagcaGCGCATCCTCCAGCAGTCAGTCGTGACAACATAGGAAGATATGACTTTGGAAGAGCTGGAGGATCATGAAGACAAGTTTAATGAGGAGGATGAACGTGCTATTGAAATGTACAGACAGCAGAGACTGGCTGAGTGGAAAGTAACTAAATTGAAGAATAAATTTGAAGAAGTTTTGGAGATCTCAGGGAAGGATTATGTTCAAGAagttactgagttaccaAAGCCGGTGAGGGTTTGTGGGTCGTCTTGCACCTTTACAAACAAGGAATTCCCCTCTTTGCCCGGATAAATCAGCACCTCAGTGGAGTTGCCAGGAAGTTTCCTGATGTCAAATTTATCAAAGCCATTTCAACAACCTGCATACCTAGTTATCCTGATAGGAATCTGCCCATGATATTTGTTTACCTGGAAGGAGATATCAAGGCTCAGTTTATTGGTCCTCTGGTGTTTGGCGACATGAACCTGACAAGAGATGAGTTGGAGTGAAAACTGTCTGAATCTGGAGCAATTAAGATGGACCTGGAGGAAAACCCTAAGAAGCCAGTTGAAGATATATTGCTGTCCTCAGTGCAATTCTCTGTCCCCATGAAGACGGACAGTGATTCCGAGGGTGACTGAGGCTGCAGCTGCTATCACTTTCTTGTGACAAATTgtctggactttttaaaaaaggaaaaagtaagaatgaattcttctgatttttagttttgtacaaattatgtttcaaatctttacattttagaaataatcattgctgg
>XM_003274853.4
AGCCAGGCTGGGGGAAGAGGCGTGGCGGCGCTGTGCGCGTGCACAAAAAGGAACTGAGGGGCGGGGGCGTTAGGGCACAGCTGGCTTGAGCAGCTGAACTGGAAACAAGATGCAGGACCCCAACGCAGACACTGAGTGGAATGACATCTTACGCAAAAAGGGTATCTTACCCCCCAAGGAAAGTCTGAAAGAATtggaagaggaggcagaagaggagcaGCGCATCCTCCAGCAGTCAGTGGTGAAAACATATGAAGATATGACTTTGGAAGAGCTGGAGGATCATGAAGACGAGTTTAATGAGGAGGATGAACGTGCTATTGAAATGTACAGACGGCAGAGACTGGCTGAGTGGAAAGCAACTAAACTGAAGAATAAATTTGGAGAAGTTTTGGAGATCTCAGGGAAGGATTATGTTCAAGAAGTTACCAAAGCTGGCGAGGGCTTGTGGGTCATCTTGCACCTTTACAAACAAGGAATTCCCCTCTGTGCCCTGATAAATCAGCACCTCAGTGGACTTGCCAGGAAGTTTCCTGATGTCAAATTTATCAAAGCCATTTCAACAACCTGCATACCCAATTATCCTGATAGGAATCTGCCCACGATATTTGTTTACCTGGAAGGAGATATCAAGGCTCAGTTTATTGGTCCTCTGGTGTTTGGCGGCATGAACCTGACAAGAGATGAGTTGGAATGGAAACTGTCTGAATCTGGAGCAATTATGACGGACCTGGAGGAAAACCCTAAGAAGCCGATTGAAGACGTGTTGCTGTCGTCAGTGCGGCGCTCTGTCCTCATGAGGAGGCACAGCGATTCCGAGGGTGACTGAGGCTACAGCTGCTGTCACATGCCGAACTTCCTTGTGACAAATtggctggattttttaaaaaaggaaaaagcaagaacGAATCCTTGTGGTTTTTAGTTTTGTATAAATTATGTTTCAAATCTTTACATTTTGGAAATAATCATTGCTGGAGATTCTGTTAAATATTttggaactcttttttttaaattatagtatttcctctaaaaaaattaaaaccagccATTTGTATGGCAAATGTC

Publications

PMID - Link Title
No publications available for this retrocopy