Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name PTGES3P4
Plot displaying the genomic locations of a retrocopy (in chr4) and its respective parental gene (in chr11). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr4:81310158-81311897  UCSC
Strand -
Parental Sequence XM_003252792.4
Parental seq. overlap 1314 bp
Parental seq. overlap (%) 62.5%
Genomic Region Intergenic
Retrocopy Summary PTGES3P4, located on chr4:81310158-81311897, is a retrocopy of the parental gene PTGES3. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PTGES3
Full Name N/A
Also known as PTGES3
Coordinate chr11:54579272-54605705
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes PTGES3P8
Bonobo Pan paniscus PTGES3P7
Gorilla Gorilla gorilla PTGES3P7
Orangutan Pongo abelii PTGES3P7
Green monkey Chlorocebus sabaeus PTGES3P1
Crab-eating macaque Macaca fascicularis PTGES3P6
Rhesus Macaca mulatta PTGES3P6
Baboon Papio anubis PTGES3P4
Marmoset Callithrix jacchus PTGES3P3
Human Homo sapiens Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PTGES3P4
GGAGAGGAGTCAACTCCCTAGCCGCAGCTGCTGCCAGAGAGGCCCACACACCCATTTCCCCATCCCCCTGCCCCGTTCACAATGCAGCCTGCTTCTGCAAAGCGGTACGATCAATCGAAGGGACTACGTCTTCATTGAATTTTGTGCTGAAGACAGTAAAGCTGTTCATGGACATTTTGAAAAATCCAAACTTACATTCAGTTTTCTTGGAGGAAATGATCATTTTAAGCATTTAAGTGAAATTGATCTTTTTCACTCTATTGATCCAAATGATCCTGGGCCTAAAAGAACGGACAGATCAATTTTATGTTGTTTATGAAAAGGAGAATCTGGCAGTCATGGCCAAggttaacaaaaaaaaagggcaaagctTAACTGGCTTAGTGTGGACTTCAACAATTCGAAAGATGGAAGATGACTCAGATGAAGACATGTCTAATTTTGATCGTTTCTCTGAGATGATGAACAGCATGGGTGGTGGTAAGGATGTAGATTTACCAGAAGTAGATGGAGCAGATGATGACTCACAAGACAGTGATGACGAAAAATTGCTAGATCTAAAGGATATTGTCATCACTTggattttgagaaagaaaaataactgctCTGCAAGATTTCAGAATTGAGAGAACTCCTGAATTGATAGCTCCAAAGGCATGCTGTATTTGCCTACTTTAACCCATTTTTcaacctgttttgtttttgaaaaggcTTCACAGAGGGTTGATATGTACCATTGTATGGGGCAATCTTAAGTCGGCTAAGTCAACAACCTGATGTATGAAGACTTCCCAGATTTCCAGGAAGCTGTTGAGGTCCTAGGCAATTGATGCAGCAGTTGGAATAAATACAAACATCTCACCTAAGTCTCCTTTTCTTCATAGCATAAATACTGACATGATAGGAAACTCTCAGCTTAGGGAAACAGAACTAAATTTTAGATTATAGAACATGGATCAGAAGTGGCTGGAACAAATTGGCTGACATCTTACTGGTAACCTGCTATTCCTCTGGTGTTATCCTTCAGGATTTTtcactaaagtttatttttcaaaaaatttacttCACATGATTCTATGTAAGTGATCACTTGTCAGTGTTCCAGATGTATCTTAGCTAAATCTAGTGAATGCCCTGACTTAgatggtttttttaaattattcatttggatgtatatacatttggTATTGTTTGACCCTTAAGCTTTTACATCTCTTAGCATGGAGGACGAAGAAAGCTGTACATAGTTGCTTGATAGTGTGTACATTTAGACCAGATTTGTAGTTGCAGGGTCAGTATggcaaataagtaaaaaaaagtttaatactttttttatttctttttttgattcaGCTTATACCAGAGCTGAAAACCTCAAGTTAAGTTCATGACAGtggggatttttttaaacatctacaTTCTTTCTAATAAACTGTTGGAagactta
>XM_003252792.4
gggcggggtgggggtggggtggcggACGAAGGGCGGGGCCGGCGCCAGGAAGGATCGCGAAGGAGCTGGGAGGCCCCGCCCTTTCCGTAGATATCTCTAGAAAGCCGCGCCGGAGCCCGAAAACAAGGACTGCGCACGCGCGGTGGCAGGGCCCGGGCATTTTGCTGCGTCACCAGCCGCCGCCCGGCCTCACCACCCCTCGTTTGCACGCACGCACGTTCATTCTCCGTCCTCGCGCCCCTTTTCCTACACTTTCCTCTTCTCCCCGACCGGAGGAGCCGCTCTTCCCGCGCGGTGCATTCTGGGGACCGAGGGCGAGCCCGCCGCTGCCGCCGTCGCCTGAGGGAAGCGAGAAGAGGCCGCGACCGGAGAGCAAAAGCGGAGTCGCCACTGGAGAGAAGTCGACTCCCTAGCAGCAGCCGCCGCCAGAGAGGCCCGCCCACCCGTTCGCCCGTCCCCCTGCCCCGTTCACAATGCAACCTGCTTCTGCAAAGTGGTACGATCGAAGGGACTATGTCTTCATTGAATTTTGTGTTGAAGACAGTAAGGATGTTaatgtaaattttgaaaaatccAAACTTACATTCAGttGTCTCGGAGGAAGTGATAATTTTAAGCATTTAAATGAAATTGATCTTTTTCACTGTATTGATCCAAATGATTCCAAGCATAAAAGAACGGACAGATCAATTTTATGTTGTTTACGAAAAGGAGAATCTGGCCAGTCATGGCCAAGGTTAACAAAAGAAAGGGCAAAGCTTAATTGGCTTAGTGTCGACTTCAATAATTGGAAAGACTGGGAGGATGATTCAGATGAAGACATGTCTAATTTTGATCGTTTCTCTGAGATGATGAACAACATGGGTGGTGATGAGGATGTAGATTTACCAGAAGTAGATGGAGCAGATGATGATTCACAAGACAGTGATGATGAAAaaATGCCAGATCTGGAGTAAGGAATATTGTCATCACCTggattttgagaaagaaaaataacttctctGCAAGATTTCATAATTGAGAGAATTCCTGAGTTGATAGCTCTAAAGGCAGATGCTGTATTTGCCTACTTTAACCCATTTTTCaacctgtttgttttttaaaaggcttcACTAAGGGTTGATATGTACCATTGTATGGGGCAATTTTAAGTCAGCTAAGGCAATAACCTTATGCATGAACATTTCCCAGACTTTCATGAAGCTGTTGAGGTCCTAGGCAATTAATGCAGCAGTTgtgataaataaaaacatctcaCCTAAGTCTCCTTTTCTTCATAACATAGATACTGACATGATAGGAAGCTCTCAGCTTAgggaaagaataaattttagatTATAAAACATGGATTCAAAAGTGGCTGGAACAAATTGGCTGACACCTTACTGGTAACCTGCTATTCCTCTGGTGTTATCCTTCAGGATTGTtccactaaaatttatttttcaaaaaatttacttCACATTATTCTATGTAAGTGATCACTTGTCAGTGTTCCAGGTGTATCTTAGCTAAAACTAGAGAATGCCCTAATTTAGATGGTTTTTGAAGCCTATACATTTGGTATTGTTTGACCCTTAAGCTTTTACATCTCTTAGCATGGAGGACGAAGAAAGCTGTACATTGTTGCTTGAGAGTCTGTACATTTAGTCCAGATTTGTATTTGCACTGTCAGTATGGCAAATGAGTGAAAAATGTTTAATACACTattggattttttatttctttttttgattcaGCTTATACCAGGGCTGAAAACCTCAATTTATGTTCATGACAgtggggatttttttaaatgtctacatTCTTTCTAATAAACTGTTGGAAGACTTCTTGGCTGTCCTTTTAAGTGTCTGGCTTActgtaatttttatgtatttaccaTTTACTGGAatggagtttatttttatttgaggaagAATTTGGGATTATTCCTCTGTTTGAAAAAAGAGGCTTGCTGTAATGTCACAGGAAACCTTTTAAAAGTGGATCTGTAATAGCATATTGTAGATGCACTTTGCAGCAGTTGGAAAAGAAAGTGTTGTGATTTGATTGAAATAAAACAATGTGTTGTCCTC

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