Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RAC1P5
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Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chr17). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr5:87800439-87800859  UCSC
Strand +
Parental Sequence XM_030796479.1
Parental seq. overlap 338 bp
Parental seq. overlap (%) 14.2%
Genomic Region Intergenic
Retrocopy Summary RAC1P5, located on chr5:87800439-87800859, is a retrocopy of the parental gene RAC1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RAC1
Full Name N/A
Also known as RAC1
Coordinate chr17:31986065-32016570
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RAC1P8
Chimpanzee Pan troglodytes RAC1P5
Bonobo Pan paniscus LOC100989777P2
Gorilla Gorilla gorilla RAC1P5
Orangutan Pongo abelii RAC1P5
Golden snub-nosed monkey Rhinopithecus roxellana RAC1P5
Marmoset Callithrix jacchus RAC1P1
Horse Equus caballus RAC1P2
Greater horseshoe bat Rhinolophus ferrumequinum RAC1P2
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

This retrocopy transcript is not present in the database for expression quantification

Related Sequence

>RAC1P5
TAAGTATGTGGTGGTGGGAACTGGAGTTTTAGGTAAAACTTGACTGCTTGTCAATTACACACCAATGTATTTTGTGTAGAATATATGTCCACTGTTTCTGAAAACTCTTCTTTCAATATGATTGATAGAAAACTGGTGAATCTGGGTTTATGGGACACAGCTGATTTAGAAGACCATCACAGATTATGTCtcctatcctatcctatcctcaaacagatttcctttttctttacaagTCCTGCattatttgaaaatgtctgtGCTAAGTGGTATCCCGAAGTGTGACACCATTGTCCCAACACTCTCATTAACCTATTGTGAACCAAATGATCTTAGAGATGATAAAAGCATATTAAGAAACTAGAGGTGAAGAAGCTGGCTCCTATCACCTGTCCACAGGGATTAGTCATGACTAAGGAGA
>XM_030796479.1
GGGAGCGGCGCGGGCGGGAGCGGCGCGGGCGGGAGCGGCCCCGCCCGGAACCTGGGAGCGGCGGCGCCGGCGCGGGGGAGGGGAGGCCGGATGTGAGTGGAGCGGccatttcctgtttctctgcaGTTTTCCTCAGCTTTGGGTGGTGGCCGCTGCCGGGCATCGGCTTCCAGTCCGCGGAGGGCGAGGCGGCGTGGACAGCGGCCCCGGCACCCAGCGCCCAGCCGCCCGCAAGCCGCGCGCCCGTCCGCTGCGCCCCGAGCCCGCCGCTTCCTATCTCAGCGCCCTGCCGCCGCCGCTGCGGCCCAGCGAGCGGCCCTGATGCAGGCCATCAagtgtgtggtggtgggagacGGagCTGTAGGTAAAACTTGCCTACTGATCAGTTACACAACCAATGCATTTCCTGGAGAATATATCCCTACTGTCTTTGACAATTATTCTGCCAATGTTATGGTAGATGGAAAACCGGTGAATCTGGGCTTATGGGATACAGCTGGACAAGAAGATTATGACAGATTACGCCCCCTATCCTATCCACAAACAGATGTGttcttaatttgcttttcccttGTGAGTCCTGCATCATTTGAAAATGTCCGTGCAAAGTGGTATCCTGAGGTGCGGCACCACTGTCCCAACACTCCCATCATCCTAGTGGGAACTAAACTTGATCTTAGGGATGATAAAGACACGATCGAGAAACTGAAGGAGAAGAAGCTGACTCCCATCACCTATCCGCAGGGTCTAGCCATGGCTAAGGAGATTGGTGCTGTAAAATACCTGGAGTGCTCGGCGCTCACACAGCGAGGCCTCAAGACAGTGTTTGACGAAGCGATCCGAGCAGTCCTCTGCCCACCTCCcgtgaagaagaggaagagaaaatgccTGCTGTTGTAAATGTCTGAGCCCCTCATTCTTGGTCCTGTCCCTTGGAACCTTTGTACgctttgctcaaaaaaaaaaatggtggagcCTTCGCACTCAATGCCAACTTTTTGTTACAGATTAATTTTtccataaaaccattttttgaaCCAATCAGTAAttttaaggttttgtttgttctaaATGTAAGAGTTCAGACTCACATTCTATTAAAATTTAGCCCTAAAATGACAAGCCTTCTTAAAGCCTTATTTTTCAAAAGCCCCCCCATTCTTGCTCAGATTAAGAGTTGCCAAAATACCTTCTGAACTACACTGCATTGTTGTGCTAAGAACACCGAGCACTAAACTGTGTAAAGACCTTCGTCTTTGAGAAGACTGTAGCTTCTGCAGTTAGGAGATGCAGACACTTGCTCAGTAGTTTTCAGATGCGTAAAGCAGAACAGCCTCCCGAATGAAGCGTTGCCACTGAACTCACCAGTGATTTAGCAGCCCATGTTCACGACATCACATTGTACTGTAATGGAGTGAGTGTAACAGCTCAGCTCTTTGGATCAGTCTTTTTGATTTCATAGTGAGTTTTCTGACCAGCTTTTGCGGAGATTTTGAACAGAACTGGTATTTCCTCTAATGAAGAATTCTGTTCAGCTGTGGGTGTGCcgggtggggtgtgtgtgatcAAAGGACAAAGACAGTATTTTGACACAATACGAAGTGGAGATTTACACTACATTGTACAAGGAATAAAAGTGTCACGGGTGAAAACTCTAAAAGGTTAATTTCTGTCAAATGCAGTAGATGATGAAAGGTTGGTATTATCAGGAAATGTTTTCTTaagcttttcctttctctttcacctGCCATCCCTCCCCAAATTGGGCATTTAATTCATCTTTAAACTGGTTGTTCTCTTAGTCGCTAACTTAGTGCTTTTCTTATAGAACCCCTTCTTACTGAGCAATATTCCTCCTTGTATTATAAAATCTTTCTGATAATGCATTAGAAGGTTTTTTTGTCAATTAGTAAAAGTGCTTTCCATGTTACTTTATTCAAAGCTAATAAGTGCTTTCCTTAGTTTTCTAGTAACTAGGTGTAAAAATCATGTGTTGCagctttatagtttttaaaatattttagataattctTAAACCATGAACCTTCTTAACATCACTGTCTTGCCAGATTACCGACACTGTCACTTGACCAATACTGACCCTCTTTACCTCGCCCACGCGGACACATGCCTCCTGTAGTCGCTTTGCCTAATGATGTTCCTTTGGGTCTGTGAGGTTCTGTAAACTGTGCTAGTGCTGACGATGTTCTGTACAACTTAACTCACTGGCAAGAATATAACGTGGGACCTTTCAACCACtacaacagaattttttaaattgacagttGCAGAATTGTGGAGTGTTTTTACATTGATCTTTTGCTAATGCAATTAGCATTATGTTTTGCATGTATGACTTAATAAATCCTTGAATCATA

Publications

PMID - Link Title
No publications available for this retrocopy