Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RBM22P4
Plot displaying the genomic locations of a retrocopy (in chr9) and its respective parental gene (in chr2). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr9:8631733-8632510  UCSC
Strand +
Parental Sequence XM_003266655.3
Parental seq. overlap 667 bp
Parental seq. overlap (%) 28.3%
Genomic Region Intergenic
Retrocopy Summary RBM22P4, located on chr9:8631733-8632510, is a retrocopy of the parental gene RBM22. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RBM22
Full Name N/A
Also known as RBM22
Coordinate chr2:27973430-27983744
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RBM22P2
Chimpanzee Pan troglodytes RBM22P3
Bonobo Pan paniscus RBM22P3
Gorilla Gorilla gorilla RBM22P3
Orangutan Pongo abelii RBM22P3
Green monkey Chlorocebus sabaeus MFAP1P1
Crab-eating macaque Macaca fascicularis RBM22P3
Rhesus Macaca mulatta MFAP1P1
Baboon Papio anubis RBM22P3
Golden snub-nosed monkey Rhinopithecus roxellana RBM22P3
Marmoset Callithrix jacchus RBM22P3
Mouse lemur Microcebus murinus MFAP1P1
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RBM22P4
aaagtgTGCCAAATCTGCAGTAAATTGGAGAATGTCAGACCTGCCTCTTAGACCTAGAGTGTGGCCTGCACATCCAGGTTCATGACACAACATTGTCTTTTGAAAGTAATGTGCCAAAGTCAGATGTCAACCAAGGGTTCTACACACAGAATATGGAGAGAGATCTGTAACTCTGATGGAACACATCCAATTAGCATGCTGGGGAAAGGCACATCCCCCAGTGTCGTGCTGCTCAAACTGGCCTGGCCCTACTATCAAAGGAATCAGCCTCACATTTGCTCCTGCTAGGTGAAAGGAGAGTGTCAGAGAAAAGAGGAGCGTCCCTACAGACACAAGAGGCCTACAGATCTGGATGATCCCCTTGCTTATCAAAATGTTGAAGACTCATATTATGGAATCAATGACCCTGTAGCAGATAAGCTTCTAAAGCAGACTTCAACCATGCCTCATCTGGACCCACCAGAGGACAAGACTCTCACCACATTAGAGGTGGATGGTCTGGGTGAAACAGATCAGAGAAATCATTTCTACCAGTTTGGAGAAATTGACCATCACTCTGATGCAGAGGCAGCAAGGTGCTTTCACCCAGTTTTCCACAAGGCAAGCTACAGACATGGCTGCTGAGAGGTCCTTTAATAAGTTGATTGTGATCGCCACAGACTCAATGTGAAATCAAGAAGATCTCaagcagccagaggaaaagaaaaagaaggacgGAACCACGTACTCTGAGATGAAGCTAGAGCCTTTTCCAGGACTGCCATGAGCTCTTCCTCCT
>XM_003266655.3
AAGAAGCACTAGACGCGTAAATAAGACGCCGACCGGCGCAGCGCTAGCCTCGGGGCTTGACGGGATTGTGGCGGTCCTGTCTCCCAATTCGGAAGCTACAGCTACCTCCGGACGCTCTCAAGATGGCGACCTCTCTGGGTTCCAACACCTACAACAGGCAGAACTGGGAGGATGCGGACTTCCCCATTCTGTGCCAGACATGTCTTGGAGAAAACCCATATATCCGAATGacCAAAGAAAAGTATGGGAAGGAATGCAAAATCTGTGCCAGGCCATTCACAGTGTTTCGCTGGTGCCCTGGAGTCCGCATGCGTTTCAAGAAGACTGAAGTGTGCCAAACCTGCAGTAAATTGAAGAATGTCTGTCAGACCTGCCTCTTAGACCTAGAGTATGGCCTGCCCATCCAGGTTCGTGACGCAGGATTGTCTTTTAAAGATGACATGCCAAAGTCAGATGTCAACAAAGAGTACTATACACAGAATATGGAGAGAGAGATTTCTAACTCTGATGGAACACGGCCAGTTGGCATGCTGGGGAAAGCCACATCTACCAGTGACATGCTGCTCAAACTGGCCCGGACCACACCCTACTACAAAAGGAATCGACCCCACATTTGCTCTTTCTGGGTGAAAGGAGAGTGTAAGAGAGGAGAGGAATGTCCATACAGACATGAGAAGCCTACAGATCCAGATGACCCCCTTGCTGATCAGAATATTAAAGATCGATATTACGGAATCAATGATCCTGTAGCTGACAAGCTTCTAAAGCGGGCTTCAACAATGCCTCGGCTGGACCCACCAGAGGATAAAACTATCACCACACTATATGTTGGTGGTCTAGGTGATACCATTACTGAGACAGATTTAAGAAATCATTTCTACCAGTTCGGAGAGATCCGGACGATCACTGTTGTGCAGAGACAGCAGTGTGCTTTCATCCAGTTTGCCACACGGCAGGCTGCAGAAGTGGCTGCTGAGAAGTCCTTTAATAAGTTGATTGTAAATGGCCGCAGACTGAATGTGAAATGGGGAAGATCCCaagcagccagaggaaaagaaaaagagaaagatggaacTACAGACTCTGGGATCAAACTAGAACCTGTTCCAGGATTGCCAGGAGctcttcctcctcctcctgcggCAGAAGAAGAAGCCTCTGCCAACTACTTCAACTTGCCCCCAAGTGGTCCTCCAGCTGTGGTGAACATTGCTCTGCCACCGCCCCCTGGCAttgctccacccccacccccagGTTTTGGGCCACACATGTTCCACCCAATGGGACCACCCCCTCCTTTCATGAGGGCTCCAGGACCAATCCACTATCCTTCTCAGGACCCTCAGAGGATGGGAGCTCATGCTGGAAAACACAGCAGCCCCTAGCACCTTGTCACCACTCTGGGGCTCTGTGGAAGAAAGGGCACTTAAAACTCCCAGTAAATCttggaataaatatatttttccttcccttGTAGTTTCCATGGTAGCTGAATGTGCTCAGATGTGGGCAGTCAGAGACTGACAGCCATGCTTTCCTATACTTGTTCAAAGGATCGATGGACCGTAAATAAGCTGCCATTAACACATCTGGTTACTGCTATAACATGACTAATAAAACCTAATGCCTGTTCCCCTTACCCATGTAGGGGACAAGCAGATGAGTGAATTGGAATGTCCAGCAGAGTTACCATCCCCAttatatgttcattttgtatattttttgggCGGGGGAAGAATTGACCTGCAGTAAAAAAACCTTTGACCGTTTTTATGTCCATTgggtattttcctttttatcatcttaaaaaaaagataactagTACTAATCATTGTAGTGGCCTAAGTGTGATTTAACCCTTTTGAAGTCACACCCTCAGAAAGATGAGTAGAAACCAGCACCAGCACAGCCCagatcttttctttcctctccttttcctcttttattcctAAAGGAATCTGACCATTTTACGTCTCTACGgcccaaaaaagacaaaaataaaaattcctttttattcctgtcAACTGGATGGAAACACAAATTTCATGGAGCTGTGTACCATTGAAGAAACCTGGTGTCTGGCATGAAATTACTGTAAAGAACTTCCTGTAAAACACATTCTTTTAACAAACTGAAATGAAAAGCATGGGAGCGTTTGAATGAAAGATGTGACCTCCTGCTGGGACTCTGATGGTCTTCAGCATTCACCTTCGTGTGTCTTCAGTGTCTCATTGTCATCCCTGCTTCTGTTTGGTCTTAGAGTGTTTGGATGTAACTGAATTGTAGATGGTAAAGGAAAtttgatgtgttttttgtttttaaataattaaaacgggtcaatttttcaaa

Publications

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