Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RBMX2P3
Plot displaying the genomic locations of a retrocopy (in chr25) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr25:1006987-1007218  UCSC
Strand -
Parental Sequence XM_003262321.4
Parental seq. overlap 191 bp
Parental seq. overlap (%) 12.3%
Genomic Region Intergenic
Retrocopy Summary RBMX2P3, located on chr25:1006987-1007218, is a retrocopy of the parental gene RBMX2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RBMX2
Full Name N/A
Also known as RBMX2
Coordinate chrX:116215930-116227323
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RBMX2P1
Chimpanzee Pan troglodytes RBMX2P3
Bonobo Pan paniscus RBMX2P3
Gorilla Gorilla gorilla RBMX2P3
Orangutan Pongo abelii RBMX2P3
Marmoset Callithrix jacchus RBMX2P3
Mouse lemur Microcebus murinus RBMX2P6
Rabbit Oryctolagus cuniculus RBMX2P1
Dolphin Tursiops truncatus RBMX2P1
Horse Equus caballus RBMX2P1
Egyptian rousette Rousettus aegyptiacus RBMX2P1
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RBMX2P3
GTACAAGGACAGCTCCTGGATCTTCCTGGGAGGGCTGTGTTACGAACAGACTGAAGGTGATGTCATCTGTGTAGTCTTTCAGTAAGGGGAGATATATTAACATTAATCTTGTACAGGACAGGAAGTCAGGAACGTGTCCAAAGGATTCTGTTTTACCTGTTATGAAGACCAGAGGAGTACCATTTTGGCCATTGACAATTTTAATGGAATCAGGATCAAGGGAAGAACTATT
>XM_003262321.4
TGGCTACTGGCCTCGGGGCCGCGCATGCGCTGCGCTGCCCCTCCCGGGCGCTGATTCCTGAATGCCGAGCGCGAACTCGAGGAGATGAACCCTTTAACTAAGGTGAAGCTCATCAACGAGCTGAATGAACGAGAGGTCCAGCTTGGGGTGGCCGATAAGGTATCCTGGCACTCCGAGTACAAGGACAGCGCCTGGATCTTCCTGGGAGGGCTTCCTTATGAACTGACTGAAGGGGACATCATCTGTGTGTTCTCACAatatggGGAGATTGTTAACATTAATCTCGTGCGGGACAAGAAAACTGGGAAATCCAAAGGATTCTGTTTCCTCTGCTATGAAGACCAGAGGAGCACAATTCTGGCCGTCGACAATTTTAATGGGATCAAGATCAAAGGAAGAACTATCCGAGTGGATCATGTATCTAACTATCGGGCTCCTAAAGACTCAGAAGAAATGGATGATGTGACCAGACAGCTCCAGGAGAAGGGCTGTGGGGCTCGTACCCCCTCACCAAGTTTGTCTGAGAGCTCTGAAGatgaaaaaccaacaaaaaagcacaaaaaggacaaaaaggaaaaaaagaaaaaaaagaaagaaaaagagaaagccgACCGGGAGGTGCAGGCAGAGCAACCATCCTCTTCGTCACCCAGACGCAAGACAGTAAAGGAAAAGGATGACCCTGGCCCTAAGAAGCACAGCAGCAAGAACTCGGAGAGAGCTCAGAAGTCAGAGCCCAGGGAGGGGCAGAAGCTCCCCAAATCCAAGACGGCCTACTCTGGTGGAGCAGAGGACCTAGAGAGGGAGCTGAAGAAGGAGAAACCCAAGCACGAGCACAAGTCCTCAAGCAGGCGGgaggcaagagaagaaaagacCAGGATTAGGGACAGAGGGCGGAGCTCAGATGCACATTCTAGCTGGTACAATGGGCGTTCCGAAGGGCGTAGTCACAGAAGTAGAAGTAGGAGCCGAGATAAATCCCATAGGCATAAAAGGGCCCGGCGCTCCCGGGAGCGGGAGTCTTCGAATCCCAGTGACCGTAGGCGTCACTGAAGACTGTTCAGCTGCTCAGTAGATTtggaaataattatgttttttaaatgcagtCAAATTCAGTTGGGTTGTTACTATTTTTGTATCTAAAACTTCTGGGGCTGGATTCTTTTAATCCCTTGAGTATTAGAGTCATTGGAAGGGCTGCAGTTTCAACAGCTAGATATCGTGGATATTCTTTGCACCATCCATTGTCCCTGTACCAGAGTATGTATTGTGAATTTTGGTTCATAAATATGGCTCTTGAACCCATAGACCCCAGTTGAAGATGGAATTTTCAGGAAAGGGAAAATACCAGATAATTCTAGAATTCTAGTCTTCCTGTTAGATGTTTATAGCCCAGCATCTTGGGACCTTTCCAGTTACTAGGTTTGGACAGCTTGATGTGAACGAATGggataggatttttaaaatcagccagCTCCATGCCCAAACCCTCCTGTTTGCAGaactttttaatgtcttttctttttcattaaaacttttttgtttgata

Publications

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