Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RFKP9
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Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr1a). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chrX:77246421-77246698  UCSC
Strand -
Parental Sequence XM_003267430.2
Parental seq. overlap 236 bp
Parental seq. overlap (%) 8.7%
Genomic Region Intergenic
Retrocopy Summary RFKP9, located on chrX:77246421-77246698, is a retrocopy of the parental gene RFK. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RFK
Full Name N/A
Also known as RFK
Coordinate chr1a:57387929-57396935
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RFKP9
Chimpanzee Pan troglodytes RFKP12
Bonobo Pan paniscus RFKP13
Gorilla Gorilla gorilla RFKP10
Orangutan Pongo abelii RFKP12
Green monkey Chlorocebus sabaeus RFKP12
Crab-eating macaque Macaca fascicularis RFKP13
Rhesus Macaca mulatta RFKP13
Baboon Papio anubis RFKP17
Golden snub-nosed monkey Rhinopithecus roxellana RFKP7
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

This retrocopy transcript is not present in the database for expression quantification

Related Sequence

>RFKP9
CCCCTGGTGTGCCCCCACGGTAGGCAGAGCCCATGCTCCTGCCTTTGGGCTGGTCCGGGGTCCAGGCACCACGTCAACGGCGGCTCCGCAAAACACACGGAACGGGCCGCAGCCCATACCCCAAGCAGACAGCGTTATGGGACATCTGCCTTACTTCTGCCCGGGCCAAGTGGTGCGGGGCTTCGGCCGCAGCTCCAAGCAGGTGGGCATCCCCGCAGCTAATTTTCCTAAGCAAGTGGTAAATAATCTTCCAGCTAATATATCCATTGGCATTTACC
>XM_003267430.2
GGGCTCGAGGCATTGGGCTGAAGAAGCGAGCGCACGCCGGCGGGGCGGAGGCCGGCTTTGGGCTTCGGGCCGCCccttcccccccaccccgcccacaCCCGGCACTTACTTCGGCTGTCTCCGCTGCCCTTCAGCGGAGACGCAGCTCCTGAGGCGCTAGGCGGCATTTGTTGGGTCGGCGGCGTCAGCGTTCAGCGGTGGCGTGCGGTCGGCGTCGTGCGGCCGGCGTCGTGCGGCCCCTGGTGCGCCCCCGCGGCAGGCAGAGCTCACGCTCCTCCCCCCCGGTTGGTCCGGGGTCTGGTGCACCGCGTCGACGGCTGCTCCGGAGGACGCGCAGACCGGGCCGCAGCCCATGCCCCGAGCGGACTGTATTATGAGGCACCTGCCTTACTTCTGCCGGGGCCAAGTGGTGCGGGGCTTCGGCCGCGGCTCCAAGCAGCTGGGCATCCCCACAGCTAATTTTCCTGAGCAAGTGGTAGACAATCTTCCAGCTGATATATCCACTGGCATTTACTATGGTTGGGCCAGTGTTGGAAGTGGAGATGTCCATAAGATGGTGGTGAGCATAGGATGGAACCCATATTACAAGAATACGAAGAAGTCTATGGAAACACATATCATGCATACCTTCAAAGAGGACTTCTATGGGGAAATCCTCAATGTGGCCATTGTTGGCTACCTGAGACCAGAAAAGAACTTTGATTCTTTAGAGTCACTTATTTCAGCAATTCAAGGTGATATTGAAGAAGCTAAGAAACAACTAGAGTTACcagaacatttgaaaatcaaagaagacaatttcttccaggtttccaaaagcaaaataatgaatGGCCACTGatgaaaaattgtattatttattcattccctGTTTTCTAGTGTTTCTGTGTTTATTACTGTCCAGATCATCTTGGTTATACACTAAAAATCAAACACTTTACTACAGTTGTGAATTAGTTTAAACAATAGAATGTTGTTATCATATCATGCTTCAACTGTTAAATTAAGCCCATCATGTCATAGCACTAAAAAGATTGAGttaaaaatcaagatttaaaaaatatatattgattaaAATGTACCACTAGAAAGGTATTACATGTGTGTAAGTGTGGGTAAAAAGACAAGTCACTGGTTTGTGatgaaaactaaaattttcaTGGTAAAATGCCAGCATGTATGTACTTGTGTAATGTGTACTTCTAAACAGAGAAGGCTTATAAAAGTAAATGCAttaaggccaagtgcagtggctcacaccgctaatcccagcactttgggaggccgaggtgggaggattgcttgagctcatgagttcaagaccagtctgggcaacatagcgagaccccatctcaataaaaaaaaaaggaaatgcattaAATAGAAGGTTGATAGTTTATCATAAACCTGCGGGGAAGAAACTCAGACTTTCTATTTTTGATACTTTGTGCATTAATACATTACAAACATGAAGATgtttgtaaaattttgttttagtcaTCTTCTTTGCAGTCACATCATTGTACTACCTTCATTATTGTACAGAGCTGCTTCAATTCTGAGTCCTCTGGACTTCCCCtgcctgttttttgttgttgttgaagacAGTAAAATAAGTGTTTTCAAATCTGTATGTCTCCTTTTTGTTGGataatgtttcttcattttaacagTAAATATTCTTGttcttcaacatttttctttggttcttttttccttttttaggaaaaacaaaacaacagactTCATCCTTAGGTTTTCTCAAGATTTAAGTGAACACATTTACACGTATCAATTTCTTAAAGAACACAAAATGTTTCCCCCCTAGCAAAACTATTTAAGAGCCAATTAAACTATGAAATagttataaaatcatttttaatatttaaggcCTTGAAATTATATTCCAAGGCAAATCTAAACGGGTTTAGTTGTATATGCACGATGTAATTTAATGCTAAAGAGTACTTACAGCTTGAGGGAAAAGCATGAAGTTTTAGTTAAATAGCCTTCATACTGTGGATTTTTCCTCCTACTAACTAATATGTGGGAAATTAAGATTACAGATTGCTTTGGGCCCCCTCAAACAGTACATTGCATCATTGTTCACTGTAGCAACAGATTTGGTGGTGATGGGGGGATAGAGGTAGAAGCAGATAGAAggtaattttaaagttaatttattatgaATCATTTTCCCCTAATCTGCATAAGTGAATTAGAACTGAtcttagtaaaaatattttgtataaaaagtACTCAGAAAAACATCTAAAGCTGTTGGAGAAGAGGTACTCATAAATACAGTTAgattgtgttttgctttttatttctttataaaaatatgtcaaaaacaGTTTTTACTTTTAGAACTCTTATACTTGAAAGAAGCCTCTATCAGTGGCTTTATGAAGTAAAGTTAAAAACAATCATaggaaatgtgaaaatatttgtgtttgttttgtctgaCTAGCTTGCTGCTAAATGCTCTCTTTAGGTGTGTGAAAGTTCTTTGATATGTTATTGTCCCTTTACATCTTGTTAAATAGCCATTGCTTTTGAGAATCAGATAGTGTGTTGTTTAGGGGTTGtgtctatatttttcaaaaacttttatattatgtattataagaAGTTACAGTAGTACCATTTTGATTAGTCTGAATGTTTTCAGGCCTTGAAATAAATTTTGACTaagtgatattttttctt

Publications

PMID - Link Title
No publications available for this retrocopy