Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name RPL10P1
Plot displaying the genomic locations of a retrocopy (in chr1a) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr1a:104654698-104655357  UCSC
Strand -
Parental Sequence XM_030807135.1
Parental seq. overlap 579 bp
Parental seq. overlap (%) 22.3%
Genomic Region Intergenic
Retrocopy Summary RPL10P1, located on chr1a:104654698-104655357, is a retrocopy of the parental gene RPL10. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL10
Full Name N/A
Also known as RPL10
Coordinate chrX:139378978-139383783
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL10L
Chimpanzee Pan troglodytes RPL10P27
Bonobo Pan paniscus RPL10P30
Gorilla Gorilla gorilla RPL10P25
Orangutan Pongo abelii RPL10P25
Green monkey Chlorocebus sabaeus RPL10P33
Crab-eating macaque Macaca fascicularis RPL10P18
Rhesus Macaca mulatta RPL10P19
Baboon Papio anubis RPL10P20
Golden snub-nosed monkey Rhinopithecus roxellana RPL10P14
Marmoset Callithrix jacchus RPL10P24
Mouse lemur Microcebus murinus RPL10P3
Rabbit Oryctolagus cuniculus RPL10P18
Pig Sus scrofa RPL10P4
Cow Bos taurus RPL10P37
Sheep Ovis aries RPL10P39
Dolphin Tursiops truncatus RPL10P5
Horse Equus caballus RPL10P1
Dog Canis familiaris RPL10P4
Panda Ailuropoda melanoleuca RPL10P19
Cat Felis catus RPL10P15
Pale spear-nosed bat Phyllostomus discolor RPL10P2
Greater mouse-eared bat Myotis myotis RPL10P1
Kuhl's pipistrelle Pipistrellus kuhlii RPL10P4
Greater horseshoe bat Rhinolophus ferrumequinum RPL10P3
Egyptian rousette Rousettus aegyptiacus RPL10P4
Sloth Choloepus didactylus RPL10P13
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL10P1
GTGTTGCCATGGGCCGCCGTCCAGCTCGTTGTTACCGGTATTGTAAGAACAAGCCATACCCAAAATCTCGTTTCTGCCGAGGGGTTCCTGATGCCAAGATCCGCATCTTTGACCTGGGTCGAAAGAAGGCAAAAGTGGATGAGTTCCCACTCTGTGGCCACATGGTATCTGATGAATATGAGCAGCTGTCCTCTGAAGCCCTGGAGGCCGCCCGTATTTGTGCCAACAAATACATGGTGAAAAGTTGTGGCAGAGATGGCTTTCACATGCGAGTGCGGCTCCATCCCTTCCATGTCATCCGCATCAACAAGATGTTGTCCTGTGCTGGGGCTGACAGGCTCCAGACAGGTATGCGAGGTGCCTTTGGGAAACCCCTGGGTACTGTGGCCCGGGTCCACGTTGCTCAGGTCATCATGTCCATCCGCAGCAAGCTTCAGAACAAGGAACATGTGATTGAAGCCTTGCGCAGGGCCAAGTTCAAGTTCCCTGGACGCCAGAAGATTCATATCTCCAGGAAGTGGGGCTTCACGAAGTTTAATGCTGACGAATTTGAAGACATGGTGGCCAAGAAGCGCCTCATCCCTGACGGTTGTGGAGTCAAGTATGTTACCAGTCACGGCCCCTTGGACAAGTGGCGGGTTCTGCACTCATGAAGGCTTT
>XM_030807135.1
CCGTGGAGATTTCTCCTCGACCTCTTCCCCGCGGTAATGCGCGAACCCTGGGTCTCCAGGAAACGGGGATACGGGGCATGGCTCCCAGCAAGGCCTGGTCCAGCCTCTCCAAAATATACGTCTGTCACAGTTAACGGCAAAGCCTAGGGCAAGAGTTCTACGCCCAAGATGGCCAGCCGGAAGCGGGCTTCTCGCGACCATGTGGCGAAGCCCCATTCGTCAGCTGGCCGCCCGCGGCCCTGGTACCCGGTCACCTCTCTGATCTGCGCATGTGCTGGGCTACGCCCGGACGCAAGCGCCAAGAGCGGCTGCGTCTATGGTCATGACGTCTGACAGAGCGTCCACCCGTCTTCGCCAGGACTCTATGGTTCTTACGCGCGCAGACAGACCGCCTATATAAGCCATGCGCAGGCGGAGGAGCGCCTCTTTCCCATCGGTGTGCCACTGAAGATCCTGGTGTCGCCATGGGCCGCCGCCCCGCCCGTTGTTACCGGTATTGTAAGAACAAGCCGTACCCAAAGTCTCGCTTCTGCCGAGGTGTCCCTGATGCCAAGATTCGCATTTTTGACCTGGGGCGGAAGAAGGCAAAAGTGGATGAGTTTCCGCTCTGTGGCCACATGGTGTCAGATGAATATGAGCAGCTGTCCTCTGAAGCCCTGGAGGCTGCCCGAATTTGTGCCAATAAGTACATGGTAAAAAGTTGTGGTAAGGATGGCTTCCATATCCGGGTGCGGCTCCACCCCTTCCACGTCATCCGCATCAACAAGATGTTGTCTTGTGCTGGGGCTGACAGGCTCCAAACAGGCATGCGAGGTGCCTTTGGAAAGCCCCAGGGCACTGTGGCCAGGGTTCACATTGGCCAAGTTATCATGTCCATCCGCACCAAGCTGCAGAACAAAGAGCATGTGATTGAGGCCCTGCGCAGGGCCAAGTTCAAGTTTCCTGGCCGCCAGAAGATCCATATCTCAAAGAAATGGGGCTTCACCAAGTTCAATGCTGATGAATTTGAAGACATGGTGGCTGAGAAGCGGCTCATTCCAGATGGCTGTGGGGTCAAGTACATCCCCAATCGTGGCCCTCTGGACAagtggcgggccctgcactcatGAGGGCTTCCTATGTGCTGACCCCCTCTTAATACTCACCAATAAATTCTACTTCCTGTCCACCTATGTCTTTGTATCTGCATTCTTGACGGGGAAGGAACTTCCTCTGGGAACCTTTGGGTCATTGCCCTTTCACTTCAGAAACAGGTCGACAACTCAGCCCTGCTCATGAGGCAGCAAACCCTGCAAAGGGCTGGGACTGGTGGCCTTCTGTCAGTTGTCTACTCTGGAGCTTGACTTGGACCTCCCCAGGTCCTAGGCAGTAGGTTGAAAAGCATTGAAGTGCTTTTCATGAAGCACAGCTGCAGCAAAGCCTTGCAATCCCAGGCTGGGGGTCAGCCTACAGTTGTGTTGCTTATTACAACACATGGGGACCAAGAGGGGCTTGTGGGCTAGAGGCTGACCAGCAGCAGCGTTTGTTTAGCAAGGGTAGGTGTGCATCATATTGGGCTTGGTCTCACCCATCTGGTTTAGCCATTCCTCCTTGGTGGGAATCATCCAGGTACTGCTGATGTCACCTGCGATTTGCCCCATTTCCTATCTCTAGCAACCTCCTGGGCCCCATGCCTCCACCCCTTCTAGAGCCTGCATTCCCAGGGCCCTCACCACCTGACCAAAGGTCTAGGCTAACCTTTGGTCCTTTGTAAGAAAAAGACCTCGGAATAGAGACGTGCGTGGCATGGTTTGGCCTGGGGATCTTAGATGTCTGACCTGAACTATTGAACAGCGCTGGCTTTTGGGGGAGCAGCGAAAATGAGAGGAGTGCTAGGTGGGTGGCCTGAGCATCTGTATCCAGGGACAGGGCTCCAAAGGCTTTTGGTCCCAGAGCTGGGGTATGTTGGCCCCAGCCCTCAGCCTGTGGCTCCCAAAAGGCCTCTGGGTTTTTGTAATCCCAATTTACAGCCATTTCTTAGGTTTTTaattacctttattttcttttgccaaaCATACCTGggaataccttttatttatttattttttaccttggGGTGATGGTTCCAAACCATAAATGTGATTATAGTTAACACATGACCCTTCTAGCATCCCAGCCAGTGTTTTTCCTGACCTCTGTTCTTTGGAGAGGAGGATGGAAGGGAGGGGTCCGGCACGCTGCTGGCATTTTGCTGTGTCCTACAGCCCCTTTCCCGGGGCACCTGGGTTCACACAGCTTTTTAGGTTACATAACTGGTGCAGATTTTCTGTGTGGAGATGCCTTGACCAGCCTTGGCTGGACTTTACCAGGCATGCAGAAGCCTGTGCCAACACAAGACAACAGCACCCAGGAGGTGCGAGCGTGGCTGCTCAGCGGTTATAACAGGCCTGACCTCATTGTTCACCGGATTACAATGAGCCGAAATATTTCCTGGTGTTTGCTGGTTTCAGGGAAGGAGTTTGATGTAGCGGCTTCACCACCCTCCTTGTAGCTATTGGGGCTTAATGGTTTCCTGGTGATTCTTACCAATCCACAATAAAGATGGCCCATTGGCA

Publications

PMID - Link Title