Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL15P20
Plot displaying the genomic locations of a retrocopy (in chr22a) and its respective parental gene (in chr4). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr22a:11019463-11021768  UCSC
Strand +
Parental Sequence XM_030812263.1
Parental seq. overlap 1749 bp
Parental seq. overlap (%) 82.1%
Genomic Region Intergenic
Retrocopy Summary RPL15P20, located on chr22a:11019463-11021768, is a retrocopy of the parental gene RPL15. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL15
Full Name N/A
Also known as RPL15
Coordinate chr4:127433066-127440915
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL15P2
Chimpanzee Pan troglodytes RPL15P15
Bonobo Pan paniscus RPL15P15
Gorilla Gorilla gorilla RPL15P13
Orangutan Pongo abelii RPL15P16
Green monkey Chlorocebus sabaeus RPL15P18
Crab-eating macaque Macaca fascicularis RPL15P6
Rhesus Macaca mulatta RPL15P6
Baboon Papio anubis RPL15P7
Golden snub-nosed monkey Rhinopithecus roxellana RPL15P9
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL15P20
CAGGTAAGCCAAGATGGGTGCATACAAGTACATCCAGGAGCTACGGAGAAAGAAGCAGTCTGATGTCATGCGCTTTCTTCTGAGGGTCCCCTGCTGGCAGTACCGCCAGCTCTCTGCTCTCCACAGGGCTCCCTGCCCCACCTGGCCTGATAAAGCGCACCGACTGGGCTACAAGGCCAAAAAGGTTACATTATATGTAGGATTCGTGTTCGCCGTGGTGGCCGAAAACACCCAGGTCCTAAGGGTGCAACTTACGGCAAGCCTGTCCATCAAGGTGTTAACCAGCTAAAGTTTGCTCGAAGCCTTCAGTCCGTTGCAGAGGAGCGAGCTGGACGCCACTGTGGGGCTCTTTAAGAGTCCTGAATTCATACTGGGTTGGTAAAGATTCGGCATACAAATTTTTTGAGGTCATCCTCATCGATCCATTCCATAAAGCTATCAGAAGAAATCCTGACACCCAATGGGTCACCAAACAAGTCCACAAGCACAAGGAGATGCACGGGCTGACATCTGCAGGCCGAAAGAGCCGTGGCCTTGGAAAGGGCCATAGGTTCCACCACACTGTTGGTGGTTCTCGCCGGGCAGCCTGGAGAAGGCGCAATACTCCCCAGCTCTACCGTTACTGCGAATATAAGTAAAGTTTGTAAAATTCATGTCTAATAAACAACTTAGGACAGTCATGTCTGCTTACAggtgttatttttctgttaaaactAGTCTGCAGATTGTTTCCCGAATGCTTTGTCAAGAAAATTAAAGTGCAATAATGTTTGAAGACAATAAGTGATGGTGTATCTTGTTTCTAGTAAGACAAACTCTTTTGTCTTTGCTTTATCTTATTAGGGAGTTACATGTCAGTGTATAAAACATACTGTGTGGTATAACaggtttaaaataatttctgtaaaaGAAGAGTACTGAAACTAGCCCTGTAGATTTGCCTGGTGCATGTGATGAAACCTGCAGCTTTATGGGATGATGGCAATGCTCTGCTTACTTTCAAGTGGCTGGGGTTTTTTTAGTTTGGCAGGTGCggattttttaaattgggctTTGCTTTAGAAATTGTAGGGTGGGAGGAGGACTTCTTAACTATGTCACgagtatatttagaaaattatggGCACAAATCTGGGTTAGCTTGAAGAAAATTGCCTCAGTCTCCACGGTACCATTTTAAGTTCACATAAAAGGTGAAAGCCCCTGGGTCAGTGCCATGGTTTCATGGCATTCAATGATTAGTGGTCGTGCTTTTAACACTGGTGTGTTTTGAAATTGAATGTGAGATAAAATTATCAGCCTTAAGGTTGGTAAGCCAGCAATCAATGCTAGGGTGGGAAGCTGGCGAGCCGGTGGCCATTAGATAAGTACCTTTCCAGTGTGAGCTCACAAGTCAACCCTAAAATACTTAACTGTAACACTAATTTGTGATCATTATGAATCCTTTCAGTCGCATCAGTGGGGAAAGTAGTTGGCTGGAAGTACCTCATTCTTAGTCCAGTCAGTCTTAAAAACATcttggagaaaaaatcctgggttACCTACTCTGTCAACTCTCACAGGCTATAGAGAAAGTCATACAAGTGCATGGATTCCAACCATATGTGCTTTCTGTAATTCTTTCTCGTGTTCCTGGCCAAAGTAACCTAAAAATCCCTACCATTCCACAAAGTTGGGCCACCACTCCTACACCCACTTTCACTGTAAGTATACCACCACATTGCATTTCTGTTCTCATCATGTCTTCCAGGAGGCTAGGCTACTGTTTTCCAGGGTGAATTTGAGTGTAAAGGAAATGTAGACAAGGAATTGCCCAATTCTAAATTCTGACTTTGCTGACTTAATTTAAATGCTCATTTCTCTGAACcaattttctcctctcttctctagGCATTTCAAAAGGATCAGTTAATTGATTTCCAGGAAGTACTCATAGCAAGTTCATAAAAGTTCTTGAGACCTacatttcttctcaaaaaaagaaaagatattaagTC
>XM_030812263.1
AGCTTTCCACCGGAAAGAGGTAAGCCAAGATGGGTGCATACAAGTACATCCAGGAGCTATGGAGAAAGAAGCAGTCTGATGTCATGCGCTTTCTTCTGAGGGTCCGCTGCTGGCAGTACCGCCAGCTCTCTGCTCTCCACAGGGCTCCCCGCCCCACCCGGCCTGATAAAGCGCGCCGACTGGGCTACAAGGCCAAGCAAGgtTACGTTATATATAGGATTCGTGTTCGCCGTGGTGGCCGAAAACGCCCAGTTCCTAAGGGTGCAACTTACGGCAAGCCTGTCCATCATGGTGTTAACCAGCTAAAGTTTGCTCGAAGCCTTCAGTCCGTTGCAGAGGAGCGAGCTGGACGCCACTGTGGGGCTCTGAGAGTCCTGAATTCTTACTGGGTGGGTGAAGATTCCACATACAAATTTTTTGAGGTTATCCTCATTGATCCATTCCATAAAGCTATCAGAAGAAATCCTGACACCCAATGGATCACCAAACCAGTCCACAAGCACAGGGAGATGCGTGGGCTGACATCTGCAGGCCGAAAGAGCCGTGGCCTTGGAAAGGGCCATAAGTTCCACCACACTATTGGTGGTTCTCGCCGGGCAGCTTGGAGAAGGCGCAATACTCTCCAGCTCCACCGTTACCGCTAATATAAGTAAAGTTTGTAAAATTCACACCTAATAAACAATTTAGGACAGTCATGTCTGCTTACAGGTGTTATTTGTCTGTTAAAACTAGTCTGCAGAtgtttcttgaatgctttgtcaAATTAAGAAAGTTAAAGTGCAATAATGTTTGAAGACAATAAGTGGTGGTGTATCTTGTTTCTAATAAGATAAgcttttttgtctttgctttatcTTATTAGGGAGTTGTATGTCAGTGTATAAAACATACTGTGTGGTATAATAGGcttaataaattctttaaaagaagAGAACTGAAACTAGCCATGTAGATCTGTCTGGTGCATGTGATGAAACCTGCAGCTTTATCAGGGTGATGGCAATGCTCTGCTGGTTTATTTTCAAGTGGCTGCGTGTTTTTAGTTTGGCAGGTGTAGACTTTTTAAATTGGGCTTTAGAAAATCTGGGTTAGCCTGAAGAaaattgcctcagcctccacagtaccATTTTAAATTCACATAAAAGGTGAAAGCTCCTGGTTCAGTGCCATGGCTTCATGTTATTCAATGACTAGTGGTAATGGTATTAACACTGGTATGTTTTGGAGTTGAATGTGAGATAAAATGATTAGCTTTAAGATTGGTAAGCTAGCAATGAATGCTAGGGTGGGAAGCTGGTGAGCCAGTGGCCATTAGATAAATACCTTTCAAGTGTGAGCTTAGACGTCAACCCTAAAATAACAGTAATGCTAATTGTGATCATTATGAATCCCTTCAGTCACATTAGGGGGAAGGTAGTTGGCTATAAGTACCTCATTCTTAGTCcaggcagtctttttttttgagacagaatctcgctctatcGCTAGTCCAGTCAGTCTTAAAAACATCTTGGGTTACCCACTCTGTCCACTCTCATAGGCTACAGAAAAAGTCACAAGCGCATGGTTTCCAACCATATATGTTTTCTGCGGTTATTTCTCTCGTTCCTGGCCAAACTACCCTAAAAATCCTTACCATTCCACAAAGTTGGACCGTCACTTATGCACCCACTTTGAGTATACCACAACATTGCATTTCTGTTTGCATCATGTCTTCCAGGAGACTAGACTACTGTTTTCCAGGATGAATTTGAGTGTAAAGAAAATGTAGACAAGGAATTGCCCAATTTTAAATTCTGACTTTGCTGACTTAATTTAAATGCTCGTTCTGAACCAATTTTCTCCTATCTTCTCTAGGGGTTTCAAAAGGCTCAGTTAATTGATTTCCAGGAAGTACTCATAGCAAGTTCATAAAAGTTCTTGAGACCTAAATttcttcacaaaaaaagaaaagatcttaaGTCATACATTTTAATTGTGTAGAGGTTGTTCAACTAAAGGAATAAATGTCTATTAAACTAAAA

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