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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL17P10
Plot displaying the genomic locations of a retrocopy (in chr4) and its respective parental gene (in chr4). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr4:39715550-39715950  UCSC
Strand +
Parental Sequence XM_003267574.4
Parental seq. overlap 345 bp
Parental seq. overlap (%) 49.3%
Genomic Region Intergenic
Retrocopy Summary RPL17P10, located on chr4:39715550-39715950, is a retrocopy of the parental gene RPL17. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL17
Full Name N/A
Also known as RPL17
Coordinate chr4:30227922-30231982
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL17P45
Chimpanzee Pan troglodytes RPL17P47
Bonobo Pan paniscus RPL17P48
Gorilla Gorilla gorilla RPL17P47
Orangutan Pongo abelii LOC103892985P40
Green monkey Chlorocebus sabaeus RPL17P41
Crab-eating macaque Macaca fascicularis LOC101867070P51
Rhesus Macaca mulatta RPL17P50
Baboon Papio anubis RPL17P57
Golden snub-nosed monkey Rhinopithecus roxellana RPL17P58
Marmoset Callithrix jacchus RPL17P47
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL17P10
CTTACAATCATGGAGTTGGGAGGTGTGCCCAGGCCAAGCAGTGGGGCTGGACACATGGTCGGTGGCCCAAAAAGATTGCTGAATTTTAGATGCGCATGCTTAAATCATGCAGAGAGTAATGCTAAACTTGagtttaaatatattatagatTCTCTGATCATTGAGCATACCCAGGTGAATAAAGCACCTAAGATGATCTGCCATACTTACAGATCTCATGGTTGGATTAACCCATACATGAGCTCACCCTACCACATCTGGATGATCTTTACTGAAAAGGAGCAAATTGTTCTTAAACCAGAGAGGAGATTTCACAAAGGAAAATACACCCtagaagaaattgaagaaacaaAACTTATGGCATGGGAATAAATTCAgcttaaaataaatgcaattaaaag
>XM_003267574.4
GTTTCTTCGGCTACGAATCTCGCGAGAAGTCAAGTTCTCATGAGTTCTCCCAGAATCCACCGCTCTTCCTCTTTGCCTAAGCAGCCTGAGGTAATCTGTGAAAATGGTTCGCTATTCACTTGACCCGGAGAACCCCACGAAATCATGCAAATCAAGAGGTTCCAATCTTCGTGTTCACTTTAAGAACACTCGTGAAACTGCTCAGGCCATCAAGGGTATGCATATACGAAAAGCCACGAAGTATCTGAAAGATGTCACTTTACAGAAACAGTGCGTACCATTCCGACGTTACAATGGTGGAGTTGGCAGGTGTGCGCAGGCCAAGCAGTGGGGCTGGACACAAGGTCGGTGGCCAAAAAAGAGTGCTGAATTTTTGCTGCACATGCTTAAAAACGCAGAGAGTAATGCTGAACTTAAGgGTTTAGACGTAGATTCTCTGGTCATTGAGCATATCCAAGTGAACAAAGCACCTAAGATGCGCCGCCGGACCTACAGAGCTCATGGTCGGATTAACCCATACATGAGCTCTCCCTGCCACATTGAGATGATCCTTACGGAAAAGGAACAGATTGTTCCTAAACCAGAAGAGGAGGTTGCCCAGAAGAAAAAGatatcccagaagaaactgaagaaacaaaaacttatggCACGGGAGTAAAttcagcattaaaataaatgtaattaaaaggaaaa

Publications

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