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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL17P50
Plot displaying the genomic locations of a retrocopy (in chr22a) and its respective parental gene (in chr4). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr22a:134227142-134227747  UCSC
Strand -
Parental Sequence XM_003267574.4
Parental seq. overlap 476 bp
Parental seq. overlap (%) 68%
Genomic Region Intragenic (LOC100592283)
Retrocopy Summary RPL17P50, located on chr22a:134227142-134227747, is a retrocopy of the parental gene RPL17. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL17
Full Name N/A
Also known as RPL17
Coordinate chr4:30227922-30231982
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL17P11
Bonobo Pan paniscus RPL17P8
Gorilla Gorilla gorilla RPL17P6
Orangutan Pongo abelii LOC103892985P5
Green monkey Chlorocebus sabaeus RPL17P21
Crab-eating macaque Macaca fascicularis LOC101867070P39
Rhesus Macaca mulatta RPL17P39
Baboon Papio anubis RPL17P35
Golden snub-nosed monkey Rhinopithecus roxellana RPL17P45
Chimpanzee Pan troglodytes Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL17P50
GCCTAAGGtgatctgtgaaaattcttctttGTTCACTCGACCCAGGAACACCACAAAATCATGCAATTCAAGAGGTTTCAGTTTTCCTGTTCACTTAAAGGACATTCGTGAAACTACCCAGGTGGTCATCAATGTATGCATATACAAAGAGCCACCAAGTGTCTGAAGGATGTCACTTTATGGAAGCAGTGTGTACCATTTCGATGTTGCAATGGAGGGGCTGGCAAGTGTGCCCAGGGCCGAACAGTGGGGCTGGACACAAGGTCGGTGGCCCAAATAGGGTGCTGGATTTTTGCTGTGCATGCTTTAAAATGCAGAGAATAATGCTGAATATAAGAATTTAGATGTAGATTCTCTCATCATTAAGCTTATCCTAGTAAACAAAGCATCCAAGATGAGCCATGCGTCTTGCAGAGCTCATTATTGGATTAACCCTTACATGACCCCCCGCTGCCACATCAAGATGATCTTTACTGATAAGGAACAAATTGTTCCTAAACCTGAGGATGAGGttgcacaaaagaaaaagatatcccagaagaaactgaagaaaaaaaatacctatggCTCTGGA
>XM_003267574.4
GTTTCTTCGGCTACGAATCTCGCGAGAAGTCAAGTTCTCATGAGTTCTCCCAGAATCCACCGCTCTTCCTCTTTGCCTAAGCAGCCTGAGGTAATCTGTGAAAATGGTTCGCTATTCACTTGACCCGGAGAACCCCACGAAATCATGCAAATCAAGAGGTTCCAATCTTCGTGTTCACTTTAAGAACACTCGTGAAACTGCTCAGGCCATCAAGGGTATGCATATACGAAAAGCCACGAAGTATCTGAAAGATGTCACTTTACAGAAACAGTGCGTACCATTCCGACGTTACAATGGTGGAGTTGGCAGGTGTGCGCAGGCCAAGCAGTGGGGCTGGACACAAGGTCGGTGGCCAAAAAAGAGTGCTGAATTTTTGCTGCACATGCTTAAAAACGCAGAGAGTAATGCTGAACTTAAGgGTTTAGACGTAGATTCTCTGGTCATTGAGCATATCCAAGTGAACAAAGCACCTAAGATGCGCCGCCGGACCTACAGAGCTCATGGTCGGATTAACCCATACATGAGCTCTCCCTGCCACATTGAGATGATCCTTACGGAAAAGGAACAGATTGTTCCTAAACCAGAAGAGGAGGTTGCCCAGAAGAAAAAGatatcccagaagaaactgaagaaacaaaaacttatggCACGGGAGTAAAttcagcattaaaataaatgtaattaaaaggaaaa

Publications

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