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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL27AP9
Plot displaying the genomic locations of a retrocopy (in chr22a) and its respective parental gene (in chr15). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr22a:66993075-66993539  UCSC
Strand +
Parental Sequence XM_003254910.4
Parental seq. overlap 409 bp
Parental seq. overlap (%) 73.7%
Genomic Region Intergenic
Retrocopy Summary RPL27AP9, located on chr22a:66993075-66993539, is a retrocopy of the parental gene RPL27A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL27A
Full Name N/A
Also known as RPL27A
Coordinate chr15:69490069-69493178
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL27AP10
Chimpanzee Pan troglodytes RPL27AP5
Bonobo Pan paniscus RPL27AP6
Gorilla Gorilla gorilla RPL27AP5
Orangutan Pongo abelii RPL27AP7
Green monkey Chlorocebus sabaeus RPL27AP7
Crab-eating macaque Macaca fascicularis RPL27AP3
Rhesus Macaca mulatta RPL27AP3
Baboon Papio anubis RPL27AP3
Golden snub-nosed monkey Rhinopithecus roxellana RPL27AP2
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL27AP9
GACATGCCATCCAGAATGAGAAAGACCCAGAAACTTTGGGGCCACATgagccacagccacagcctcaTCAGCAAGCACCAGAAGCACTCAGGAGGCAGTAGAATGCTGGTGGCATGCATCACCACGGGATAAACTTTGATAAATATCACCCTGGCTACTTTGGAAAGTTGGTATGAGGATTACCACTTAGAGAAGAACCAGAGCTCCTGCTCAACTGCCAATCACAATACATTGTGGACTTTGGTCAGTGAGCAGACACAGGTGAATGCTGCTAAAAACAAGACTGGGGCTCTCCCATCATTGATGTGGTAGATTACTACAAAGTTCTGGGAAAGGGAAAGCTCCCAAAGCATCCTGTCATTGTGAAGGCCAAATTCTTCAGAAGAAGAACTCAGGAGAGGATTAAAGGGTGTTGGAGTGGGGCTGGTGGTGTGAAGCCACATGGAGGGAGGTTTGTTAAATGCT
>XM_003254910.4
CGCGCCCGATACCTCGCGAGACTTGGCGAAGGCCTTCCTTTTTCGTCTGGGCTGCCAACATGCCATCCAGACTGAGGAAGACCCGGAAACTTCGGGGCCACGTGAGCCACGGCCACGGCCGCATAGGCAAGCACCGGAAGCATCCCGGAGGCCGCGGTAATGCTGGTGGTCTGCATCACCACCGGATCAACTTCGACAAATACCACCCAGGCTACTTTGGGAAAGTTGGTATGAAGCATTACCACTTAAAGAGGAACCAGAGCTTCTGTCCAACTGTCAACCTTGACAAATTGTGGACTTTGGTCAGTGAACAGACACGGGTGAATGCTGCTAAAAACAAGACTGGGGCTGCTCCCATCATTGATGTGGTGCGATCGGGCTACTACAAAGTTCTGGGAAAGGGAAAGCTCCCAAAGCAGCCTGTCATCGTGAAGGCCAAATTCTTCAGCAGAAGAGCTGAGGAGAAGATTAAGAGTGTTGGGGGGGCCTGTGTCCTGGTGGCTTGAAGCCACATGGAGGGAGTTTCATTAAATGCTAACTACTTTTTC

Publications

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