Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL5P2
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr3:16806106-16807532  UCSC
Strand -
Parental Sequence XM_030825041.1
Parental seq. overlap 806 bp
Parental seq. overlap (%) 76.7%
Genomic Region Intragenic (HSPA12A)
Retrocopy Summary RPL5P2, located on chr3:16806106-16807532, is a retrocopy of the parental gene RPL5. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL5
Full Name N/A
Also known as RPL5
Coordinate chr12:81803209-81813398
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL5P27
Chimpanzee Pan troglodytes RPL5P19
Bonobo Pan paniscus RPL5P21
Gorilla Gorilla gorilla RPL5P19
Orangutan Pongo abelii RPL5P20
Green monkey Chlorocebus sabaeus RPL5P18
Crab-eating macaque Macaca fascicularis RPL5P20
Rhesus Macaca mulatta RPL5P20
Baboon Papio anubis RPL5P26
Golden snub-nosed monkey Rhinopithecus roxellana RPL5P23
Marmoset Callithrix jacchus RPL5P25
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL5P2
GCAGGACGGGGTCTGTTAAAGTTGTCAAGAATAAGGCCTGCTTTAAGAGATACAAAGTGAAATTTAGAAGACAAGAGGGTAAAATGGATTACTGTGCTTGGAAATGCTTGGTGATACAGGATAAAAATAAGTACAACATGCCCAAATACAGGATGATCGCTCACATAATTAACACAGAGAGTGTTTGCCACATTGCTTATGCCTGTATGGAAGGGGATATGATAGTTTGTGTACCTTATGCTCATGAGCTACCAAAACATGGTGTGAAGGTTGGCCTGACAAATTATGCTGTGGCACATTGTCCTGGCCTGCTGCTGGCCTGCAGGCTTCTCAGTAGGTCTGGCATGGGCAAGATCTATGAAGGCCAAGTGGAGGTGATTGGTGATGAATACAATGTAGAAAGCACTTATGGTCAGCCTGATGCCTTCCCCTGCTATTTGGATGCAGGCCTTGCCAAAACTACCTCTGGCAATAAAGTCTTGGGGGGCCTTGAAGGGAGTTGCAGATGGAGGCTTGTCTACTCCTCATGGTACCCAGTGATTCCCTggttataattttgaaaacaagGAATTTAATGCAGAAATGCGTCGAAAGCACATCATCGGTCAGAATGTTGCGGATTATACGCATTTCCTAacagaagaagatgaagatgctTCCAAAAATCAATTCTCTCAATACATAGAAAACAGCGTAACTCCAGGCATGGAGGAGGTGTAGAAGAGAGTAATGCTGCTATGCAACAGAATCCAGTCTATGGGAAGAAACCCAAGAAAGAAGTTTAAATAAAGAGAgggactaGTAATGGGTGACGGTGGTGAAACTGTCCCAAAATGTCCCTTGCTCAGAAGAAAGATCAGGTAGCTCAAAGGAAGGTGTGCTTCCTCAGAGTTCAGGATCAGGCTGCTGAGAGCTAAATCAAACAACAATTTTCCATGaggatttttcaaataaaaacaatgaacttATGG
>XM_030825041.1
TTCACCCCCACTAGCGCCGCCGGGCCTGCAGGTCTCTGTCGAGCCGCGGACGCGGGTCTCTCTTCCGCAGGATGgggTTTGTTAAAGTTGTTAAGAATAAGGCCTACTTTAAGAGATACCAAGTGAAATTTAGAAGACGACGAGagggCAAAACTGATTATTATGCTCGGAAACGCTTGGTgatacaagataaaaataaatacaacacacCCAAATACAGGATGATAGTTCGTGTAACAAACAGAGATATCATTTGTCAGATTGCTTATGCCCGTATAGAGGGGGATATGATAGTCTGCGCAGCATATGCACACGAACTGCCAAAATACGGTGTGAAGGTTGGCCTGACAAATTATGCTGCAGCATATTGTACTGGCCTGCTGCTGGCCCGCAGGCTTCTCAATAGGTTTGGCATGGACAAGATCTATGAAGGCCAAGTGGAGGTGACTGGTGATGAATACAATGTGGAAAGCATTGATGGTCAGCCAGGTGCCTTCACCTGCTATTTGGATGCAGGCCTTGCCAGAACTACCACTGGCAATAAAGTTTTTGGTGCCCTGAAGGGAGCTGTGGATGGAGGCTTGTCTATCCCTCACAGTACCAAACGATTCCCTGGTTATGATTCTGAAAGCAAGGAATTTAATGCAGAAGTACACCGGAAGCACATCATGGGCCAGAATGTTGCAGATTACATGCGCTACTTAatggaagaagatgaagatgctTACAAGAAACAGTTCTCTCAATACATAAAGAACAGCGTAACTCCAGACATGGAGGAGATGTATAAGAAAGCTCATGCTGCTATACGAGAGAATCCGGTCTATGAAAAGAAGCccaagaaagaagttaaaaagaagagGTGGAACCGTCCCAAAATGTCCCTTGCTCAGAAGAAGGATCGGGTAGCTCAAAAGAAGGCAAGCTTCCTCAGAGCTCAGGAGCGGGCTGCTGAGAGCTAAACCAAACAATTTTCTATGATTTTTCAGATATAGACAATAAACTTATGAACAGCAACTA

Publications

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