Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name RPLP0P5
Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chr10). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr5:26943829-26944903  UCSC
Strand +
Parental Sequence XM_003279962.2
Parental seq. overlap 945 bp
Parental seq. overlap (%) 78.6%
Genomic Region Intergenic
Retrocopy Summary RPLP0P5, located on chr5:26943829-26944903, is a retrocopy of the parental gene RPLP0. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPLP0
Full Name N/A
Also known as RPLP0
Coordinate chr10:87355422-87360604
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPLP0P13
Chimpanzee Pan troglodytes RPLP0P1
Bonobo Pan paniscus RPLP0P1
Gorilla Gorilla gorilla RPLP0P2
Orangutan Pongo abelii RPLP0P1
Green monkey Chlorocebus sabaeus RPLP0P8
Crab-eating macaque Macaca fascicularis RPLP0P1
Rhesus Macaca mulatta RPLP0P1
Baboon Papio anubis RPLP0P1
Golden snub-nosed monkey Rhinopithecus roxellana RPLP0P8
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPLP0P5
CCTCTCACCAGGTGTCCTCGTGTAAGTGACATCGTCTTTAAACCCTGTGTGACAATCCCTGATGCACTGCTGTGATGCCCAGGGAAGACAGGGTGACCTGGAAATCCAACTACTTCCTTAAGATCATCCAACTTTTGGATAATTATCCGAAATGTTTCATCGTGGGAGCAGACAATATGGGCTCCAAGCAGATGCACCAGATCCATATGTCCCTCTGCAGGGAGGCCATGGTGCTGATAGGCAAGAACACCATGATGCACAAGGCCATCTGAGGGCACCTGGAAAACAACGCAGCTCTGGAGAAACTGTTGCCTCATATTCAGGGGAATGTGGGCTTTGTGTTCATCAGGGAGGACCTCACTGAGATCAGAGACCTGCTGCTGGCCAACAAGGTGCCAGCTGCGGCCCATGCTGGTTCCATTGCCCCATGTGAAGTCACTGTGCCAGTCCAGAACACTGGTCTGGGGCCCGAGAAGACCTCCTTTCTCCAGGTTTTAGGCATTACCACTAAAATCTCCAGGGGCGCCACTGAAATCCTGAGTGATGTGCAACTGATCAAGACTGGAGACAAAGTGGGAGCCAGTGAAACCACACTGCTGAacatctctcccttctcctttggGCTGGTCATTCAGCAGGTGTTCGATAATGGCAGCATCAACAACCCTGAAGTGCTTGACATCACAGAGGAAACTGCATTCTCACTTCCTGGAGAGTATCTGTGATGTTGCCAGTGTCTGTCTGCAGATTGGCTACCCAACTGTTGCATCAGTACCCCATTCTATCATCAATGGGTACAAACGAGTCCTGGCTTTGTCTATGGAGATTGATTACACCTTCCCACTTGCTGAAAAGGTCAAGGCCTTCTTGGCTGATCCATCTGCCTTTATGGtacccCAACTAAGGTTGAAGCCAAGGAGGAGTCGGAGGAATTGGACAAGGATATGGGATTTGGTCTCTTTGACTAGTCACCAAAAAGCAACCAACTCAGCCAGCTTTATTTGCAGAACAAGGAAataaaggctt
>XM_003279962.2
GTCGGACGGGCGATGGCGCCAGCCAATAGACAGGAGCGCTAACCGCGGTTTCTGATTGGCTACTTTTTTCGCATATAAAATGCTCGCGCGGGCGCGAGGCCCTTCTCTCGCCAGGCGTCCTCGTGGAAGTGACATCGTCTTTAAACCCTGCGTGGCAATCCCTGACGCACCGCCGTGATGCCCAGGGAAGACAGGGCGACCTGGAAGTCCAACTACTTCCTTAAGATCATCCAACTATTGGATGATTATCCGAAATGTTTCATCGTGGGAGCAGACAATGTGGGCTCCAAGCAGATGCAGCAGATCCGCATGTCCCTTCGCGGGAAGGCCGTGGTGCTGATGGGCAAGAACACCATGATGCGCAAGGCCATCCGAGGGCACCTGGAAAACAACCCAGCTCTGGAGAAACTGCTGCCTCATATCCGGGGGAATGTGGGCTTTGTGTTCACCAAGGAGGACCTCACTGAGATCAGGGACATGTTGCTGGCCAATAAGGTGCCAGCTGCTGCCCGTGCTGGTGCCATTGCCCCATGTGAAGTCACTGTGCCAGCCCAGAACACTGGTCTCGGGCCCGAGAAGACTTCCTTTTTCCAGGCTTTAGGTATCACCACTAAAATCTCCAGGGGCACCATTGAAATCCTGAGTGATGTGCAGCTGATCAAGACTGGAGACAAAGTGGGAGCCAGCGAAGCCACGCTGCTGAACATGCTCAACATCTCCCCCTTCTCCTTTGGGCTGGTCATCCAGCAGGTGTTCGACAATGGCAGCATCTACAACCCTGAAGTGCTTGACATCACAGAGGAAACTCTGCATTCTCGCTTCTTGGAGGGTGTCCGCAATGTTGCCAGTGTCTGTCTGCAGATTGGCTACCCAACTGTTGCATCAGTGCCCCATTCTATCATCAACGGGTACAAACGAGTCCTGGCCTTGTCTGTGGAGACGGATTACACCTTCCCACTTGCTGAAAAGgtCAAGGCCTTCTTGGCTGATCCATCTGCCTTTGTGGCTGCTGCCCCTGTGGCTGCTGCCACCacagctgctcctgctgctgctgcagccccAGCTAAGGTTGAAGCCAAGGAAGAGTCGGAGGAGTCGGACGAGGATATGGGATTTGGTCTCTTTGACTAATCAGCAAAAAGCAACCAATTTAGCCAGCTTTATTtgcaaaacaaggaaataaaggcttacttctttaaaaa

Publications

PMID - Link Title