Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SNRPEP2
Plot displaying the genomic locations of a retrocopy (in chr2) and its respective parental gene (in chr5). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr2:18387119-18387576  UCSC
Strand -
Parental Sequence XM_030813184.1
Parental seq. overlap 431 bp
Parental seq. overlap (%) 27.2%
Genomic Region Intragenic (TRIM33)
Retrocopy Summary SNRPEP2, located on chr2:18387119-18387576, is a retrocopy of the parental gene SNRPE. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SNRPE
Full Name N/A
Also known as SNRPE
Coordinate chr5:56803082-56812941
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens SNRPEP13
Chimpanzee Pan troglodytes SNRPEP6
Bonobo Pan paniscus SNRPEP6
Gorilla Gorilla gorilla SNRPEP5
Orangutan Pongo abelii SNRPEP7
Green monkey Chlorocebus sabaeus SNRPEP8
Crab-eating macaque Macaca fascicularis SNRPEP5
Rhesus Macaca mulatta SNRPEP5
Baboon Papio anubis SNRPEP4
Golden snub-nosed monkey Rhinopithecus roxellana SNRPEP1
Marmoset Callithrix jacchus SNRPEP3
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SNRPEP2
CAGCGTGTGGGTGTGCTCGTTGTGAAATTCCACCATGGCCAAGGCCAGAAAGTGCAGAAGGTTACGGTGCAGCCCATCAACCTCATCTTCAGATAAACTTACAAAATAGATCGCGGATTCAGGTGTGGCTCTATGAGCAAGTGAATATGCGGATAGAAGGCTGTATCATTATTTTTGATGAGTATATGAACCTTGTATTAGATGATGCAGAAGAGATTCATTCTAAAACAAAGTCATGAATACAACTGAGTCAGATCATGCTAAAAGGACATAATATTACTCTGCTGCAAAGTTTCTCCAACTAGAAATGATCAATGAAGTGAGAAATTGTTGAGGTGGATACAGTTTGTTTTTAGATGTCCTTTGTCCAATATGAACATTTATTAGTATTGTTTCGATTACCCTTATGGTATTACAAGATGGCAATAAATGCTGTGGGattgtttgtatttaaaaaa
>XM_030813184.1
TTCCGCTTCCGGTTCTTTATTCCGGAAGTTGCTCTCACAGGCAGCGTGCGAGTGTGCTCTTTGTGAAATTCCACCATGGCGTACCGCGGCCAGGGCCAAAAAGTGCAGAAGGTTATGGTGCAGCCCATCAACCTCATCTTCAGATACTTACAAAATAGATCGCGGATTCAGGTGTGGCTCTATGAGCAGGTGAATATGCGGATAGAAGGCTGTATCATTggTTTTGATGAGTATATGAACCTTGTATTAGATGATGCAGAAGAGATTCATtctaaaacaaaatcaagaaaacaactgGGTCGGATCATGCTAAAAGGAGATAATATTACTCTGCTACAAAGTGTCTCCAACTAGAAATGATCAATGAAGTGAGAAATTGTTGAGAAGGATACAGTTTGTTTTTAGATGTCCTTTGTCCAATATGAACATTTAttcatattgttttgattaccCTTATGTTATTACAAGATGGCAATAAATACTGTGGGATTGTTTGTATTAAAAAATTTACATTGCTTCTAACTATTCAGCAGTAGAGACTTTTTACGCAGTAACACCATTCATTGTTGGTATTTACTTTAGTTTTCTGAAGGGTGGCAGTTGCCTTGAGCAGTTGGTATTCGCAGAGCTTGGACCTGTAGATTTTGAGGCAGATTAGGAATTCTGCCTGACAGGTAAGCTTCCAGTATTGGGAGGTGGAGAAGGGGAgggttcagaaaaataaataagggtTATTGCACTAACAAATGTCTTCATCACTTCTAGTTCTGGATGCTGGAATACCAGAGTTTCTAACCTAAATAGGTTGGGTACATTATTTAATGGGGTCAGTATTGCTCAACACTCTCATTGAGTCACTGTGAGGTCTTTGTGAATTTTATCACTAAGATCAGAATGTTAGAAGTATTTAGGTATAGGGAAAGAATGAAGTGCTTTTCAAGTACATTAAAAATCAGTTAAGAGTTTACAGGAAAGAGACTGAGATTGGTAATCTGAAAAGGACCACAAGCACAGCTGGTAGGCAAATTGTTAGGCAGAATAATGGTATGTTGGAGAAACACACCTGTCTCTTATTCTTATCTCTCAAGAATTTTGGTTCTTCCCCCAGTGATTGCTGATTAAATTCTTATGTGGACAGGTTTCCCTTCCCCCCAGTATCGCACATGGTTCTAGTTAGAATTCTGTTAGATAGTGAGCATCTGCTGTTAGCTAGACACGTGTTGAATCAATACAGTGAAACAGACTGGTAAATAGGTAGTTTTAATGCCTCTTCCTAAGTGCTGTTTAAATTGGATCTTGAAAGATGAATAAGGCCTGCCTTAAGTTCTGCTAAAGACAATGTTGTTACTAAGGATGGGTGAGGAAGGACCAAGAAGTCTGGCTCCTGCTTTTCTACATGCCTGTGAAGGAGACGTTTCATgaaactaaataaaagaaatccTTTCTGAGATAGAGGAGATTTGTAGGTGAATGCAGAAGTGTATCCAGCTTTGAACCGTGCATTCCATCTATATTCCTCTTGTCTGAACTCATGCTCttttgattatattttgaaataaagggCTGCATTAGTTCTTTTAA

Publications

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