Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SPCS2P2
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Plot displaying the genomic locations of a retrocopy (in chr6) and its respective parental gene (in chr15). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr6:58241438-58242918  UCSC
Strand -
Parental Sequence XM_003254710.4
Parental seq. overlap 1102 bp
Parental seq. overlap (%) 76.9%
Genomic Region Intergenic
Retrocopy Summary SPCS2P2, located on chr6:58241438-58242918, is a retrocopy of the parental gene SPCS2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SPCS2
Full Name N/A
Also known as SPCS2
Coordinate chr15:61744387-61771081
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens SPCS2P1
Chimpanzee Pan troglodytes SPCS2P3
Bonobo Pan paniscus SPCS2P3
Gorilla Gorilla gorilla SPCS2P3
Orangutan Pongo abelii SPCS2P4
Green monkey Chlorocebus sabaeus SPCS2P4
Crab-eating macaque Macaca fascicularis SPCS2P4
Rhesus Macaca mulatta SPCS2P4
Baboon Papio anubis LOC101026629P3
Golden snub-nosed monkey Rhinopithecus roxellana SPCS2P3
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

This retrocopy transcript is not present in the database for expression quantification

Related Sequence

>SPCS2P2
GGGAGAAGTGGTGGTAGTGGAGGCAGTAGTGGGGCTGGCGGTGGTTCCAGGTGCGGGACAGGCAGTGGCCATAGCGGCTTGCTGGATAAGTGGAAGATAGATGATAAGCCTGTAAAAATTGACGAGTGGGATGGATTAGCTGTGAAAAACTCTTTGGATGATTCTGCCAAAAAGTtacttctggaaaaataaaaatatgtggagAATTTTGGTCTCATTGATGGTCGCCTCACCATCTGTACAATCTCCTGTTTCTTTGCCATAGTGGCTTTGATTTGGGATTATATGCACCCCTTTCCATAGTCCAAACCCATTTTGGCTTTGTGCATCATATCCTATTTTATGATGATGGCGATTCTGACCATTTATACCTCATATAAGGACAGGAGCATCTTTCTCGTGGCCCACAGGAAAGATCCTATAGGAATGGATCCTGATGATATTTGGCAACTGTCCTCCAGTCTTAAAAGGTTTGATGACAAATACACCTCGAAGCTGACCTTCATCAGTGGGAGAACAAAGCAGCAGCGGGAAGCCGAGTTCACCAAGTCCATTGCTAAGTTTTTTGACCACAGTGGGACACTGGTCATGGATGCACATGAGCCTGAAATATCCAAGCTCCATGGCAGTCTCgccatagaaagaaaaataatgagaaaaaagagccaaTTCTAAAAGTAGCCCTCTTTCTGTTGGATCTTGCTGAATTACTggtttgtggggtggggggagatagaaagaacttaaaatggataaagtaaaaaaaagtttaaaaatcccTGTTTTGTCCTGAAATTTTAGTCTGTTCTGGATAAATAGGATTTTCTGACACAGATATGAGAAGTTGTAGCTCTGATGTCTAGCTGTAGTCTCCTTGGTCTGCTGattgcattattttaatttgcttttctgggAAAGTAGTTTTGCTAAAAGCTGTACAGACTTTCCTTTGTACGTAGTAGTACTTTATATAGTATAGCTTTGGGCCATGTAGCATTTTAAGACTCAATTAATAAGAAATTAATCTGTTGCTGACTCTGTTAATTCCTATTTCCACATGTATTTCCTTGAAGAATTCAGGATATGACTTCTTGTGTATGACAGTTTTCCTTCACACACTGTTtttgtgggtgtgtatatatCTGATTTGGggagaatttaaaaaacacataa
>XM_003254710.4
AGACAAGTCGGAGGGGAGGGAGACGCAGAGGCGGACAACATGGCGGCGGTAGCTACACAGAGCGGGAGAAGCGGTGGTAGCGGAGGCTGTAGTGGGGCTGGCGGTGCTTCCAACTGCGGGACAGGCAGTGGCCGTAGCGGCTTGTTGGATAAGtGGAAGATAGATGATAAGCCtgtaaaaattgacaagtgggatggATCAGCTGTGAAAAACTCTCTGGATGATTCTGCCAAAAAGGTACttctggaaaaatacaaatatgtggAGAATTTTGGTCTAATTGATGGTCGCCTCACCATCTGTACAATCTCCTGTTTCTTTGCCATAGTGGCTTTGATTTGGGATTATATGCACCCCTTTCCAGAGTCCAAACCCGTTTTGGCTTTGTGTGTCATATCCTATTTTGTGATGATGGGGATTCTGACCATTTATACCTCATATAAGGAGAAGAGCATCTTTCTCGTGGCCCACAGGAAAGATCCTACAGGAATGGATCCTGATGATATCTGGCAGCTGTCCTCTAGTCTTAAAAGGTTTGATGACAAATACACCTTGAAGCTGACCTTCATCAGTGGGAGAACAAAGCAGCAGCGGGAAGCCGAGTTCACAAAGTCCATTGCTAAGTTTTTTGACCACAGTGGGACACTGGTCATGGATGCATATGAGCCTGAAATATCCAGGCTCCATGACAGTCTCgccatagaaagaaaaataaagtagccaATTCTAAAAGTAGCCCTCTTTCTCCTGGATCTTGCTGAATTACTGGCTTGGAGGATGGGGGAgataaaaagaacttaaaatgggtaaagtaagaaatgttaaaaagtcCCTGTTTTGTCCTGAAATTTTAGTCTATTCTGGATAAATAGGATTTTCTGACACAGATATGAGAAGTTGTAGCTCTGATGTCTAGCTGTAGTCTCCTTGATCTGCTGattgcattattttaatttgcttttctgggAAAGCAGTTTTGCTAAAAGCTGTACAGACTTTTTCTTTTGTACCTAGCAGTACTTTATATAGTATAGCTTTGGGCCATGTAGCATTTTAagactcaattttaaaaaattattaatctgTTGCTGACTCTGTTAATTCCTATTTCAATATGTGTTTCCTTGAAGAATTCAGGATACAACTTCTTGTGTATGACAGCTTTCCTTCACACACTATTtttgtgggtgtgtatatatCTGATTTGGggagaatttaaaaaacacatagctttttaatttgtttgaaaCAGACTTTCTGCCTGTTACATTTTGTGCTTTTAACCAATTAAAGAAGCCAATGgcattttagttttatattgtgTTTTCCACTAGTATATCCCTGTTGATTTGTTTGTGCCTTTTATTAACtgccattttctaaaatttttttcaataaaaggaaggaagatgtGAAAAAAA

Publications

PMID - Link Title
No publications available for this retrocopy